Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03726 ATGGCGCATCTAAGAGCCAAGCTATTTTTCCTTCTATGCGCTCTCTGTTATTCTCTCAACGCCATTGCTGCAAAGAGCTATTATGATATACTTCAAGTTTCAAAAGGTGCATCGGATGAACAAATAAAAAGAGCGTATAGGAAGCTTGCATTGAAGTACCATCCTGATAAGAATCAGGGCAATGAAGAAGCTAATAAGAGATTTGCTGAGATTAGCAATGCTTATGAAGTATTGTCGGATAGCGAGAAGAGGAGTATTTATGACAGGTATGGTGAAGAGGGTTTGAAGCAGCATGCTGCAAGTGGAGGCAGAGGTGGTGGTGGAATGAACATCCAAGATATTTTTAGCTCTTTCTTTGGTGGGGGATCAATGGAGGAGGAAGAGCAAATTGCAAAAGGTGATGACGTGATTGTTGAATTGGATGCAAGCCTTGAGGATTTGTACATGGGAGGTTCCTTGAAGGTTTGGAGGGAGAAAAATGTTGTAAAGCCAGCACCTGGGAAGAGACAATGTAACTGTAGAAATGAGGTTTATCACAGGCAAATTGGGCCTGGGATGTTTCAACAGATGACAGAGCAGGTCTGTGAGCAATGTCCTAATGTCAAATACGTAAGGGAGGGGTATTTCATCACTGTTGATATTGAAAAAGGCATGCAAGATGGGCAGGAGGTGCTATTTTATGAGGATGGCGAGCCCATAATTGATGGAGAATCCGGAGATTTAAGGTTTCGTATCCGTACTGCACCTCATGAACAATTCAGAAGGGAAGGCAGTGACTTACACACCACTGTCACTATAACTCTGGTTCAAGCCCTTGTTGGTTTTGAGAAGACCATTAAACACCTAGATGAGCATCTGGTGGACATAAGCACAAAGGGAATTACAAAGCCAAAGCAAGTAAGGAAGTTCAAAGGGGAGGGCATGCCATTGCATATGAGCACAAAGAAAGGAGACCTTTATGTCACTTTTGAGGTTCTATTCCCCACGTCACTAACGGAGGATCAAAAAACAAAAATAAAAACAATTCTTGGTTAG 1035 0.4242 MAHLRAKLFFLLCALCYSLNAIAAKSYYDILQVSKGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEISNAYEVLSDSEKRSIYDRYGEEGLKQHAASGGRGGGGMNIQDIFSSFFGGGSMEEEEQIAKGDDVIVELDASLEDLYMGGSLKVWREKNVVKPAPGKRQCNCRNEVYHRQIGPGMFQQMTEQVCEQCPNVKYVREGYFITVDIEKGMQDGQEVLFYEDGEPIIDGESGDLRFRIRTAPHEQFRREGSDLHTTVTITLVQALVGFEKTIKHLDEHLVDISTKGITKPKQVRKFKGEGMPLHMSTKKGDLYVTFEVLFPTSLTEDQKTKIKTILG* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03726 344 Gene3D - 250 328 - -
Rops8g03726 344 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Rops8g03726 344 FunFam DnaJ subfamily B member 11 249 344 - -
Rops8g03726 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 253 337 IPR008971 GO:0006457|GO:0051082
Rops8g03726 344 Gene3D - 128 249 - -
Rops8g03726 344 SMART dnaj_3 25 83 IPR001623 -
Rops8g03726 344 PRINTS DnaJ domain signature 46 61 IPR001623 -
Rops8g03726 344 PRINTS DnaJ domain signature 83 102 IPR001623 -
Rops8g03726 344 PRINTS DnaJ domain signature 63 83 IPR001623 -
Rops8g03726 344 PRINTS DnaJ domain signature 28 46 IPR001623 -
Rops8g03726 344 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 11 6 343 - -
Rops8g03726 344 FunFam DnaJ protein ERDJ3B 23 128 - -
Rops8g03726 344 SUPERFAMILY Chaperone J-domain 22 123 IPR036869 -
Rops8g03726 344 Gene3D DnaJ domain 23 127 IPR036869 -
Rops8g03726 344 CDD DnaJ 27 80 IPR001623 -
Rops8g03726 344 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Rops8g03726 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 132 256 IPR008971 GO:0006457|GO:0051082
Rops8g03726 344 Pfam DnaJ domain 27 88 IPR001623 -
Rops8g03726 344 CDD DnaJ_C 134 331 - -
Rops8g03726 344 Pfam DnaJ C terminal domain 138 328 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03726 Rops-Chr8 77671868 77676551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03726 25 90 C2H2 Transcription Factor Family AT1G74250 40.845 1.25e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03726 K09517 - rvl:131304873 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03726 8 77671868 77676551 Rops8g03726 8 77671868 77676551 ECH