Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03724 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAGGGAAGGTGGACACAAGAGGAGGATGAAATTTTGACTAAGTACATTCAGGCCAATGGGGAAGGCTCATGGAGGTCATTGCCAAAAAATGCAGGATTGCTTAGATGTGGGAAGAGTTGCAGGTTAAGATGGATTAACTATTTGAGAGCTGATCTCAAAAGGGGGAACATTTCAGTTGAAGAGGAAAATATCATTGTAAAGTTGCATGCTTCTTTTGGCAACAGGTGGTCTTTGATCGCAAGTCACTTGCCTGGGAGAACAGACAACGAGATAAAAAATTATTGGAACTCACACTTGAGCAGAAAAGTTTACAGCTTCCATGGAACTAGTAATAAAGATATCTCCATGCAAGCCCAAGGGATCGTGGACACACCTCCCAAGCGTAAAGGTGGTAGAACCAGCAGATGGGCAATGAAGAAGAACAAAACCTTTACCCAAAAGGCTAATAAGACGCCAAAACAAAGTGCCACTCCTCAGAATAAGGAACATTATCCACTTCCACCTACCCCTTCACTAGAGAGCGAGAACTTATCTAGTACAATCATAGATTTCATGGTTTTTGACCCTGAAAAGGAGGAATCCAAGGTAGAAAGAGAAGATCTGGCTGATGGGTCAAGTGCTGGTTTATATAACCAGCAAATTCGAGGAGAAAATGGTGACAGAGATGAGTTGCAGGTATTTGACGGTGAAAAAGAAACTGAGGACATGTTAGGGCGGTGTCAGGAGGCTATTAATGGTGGTGAGGTGTTGAGTTTTAATGATATCATGGACACTTGTGTGCTGGAACCAAGTGGGTTTCTGAAGTTTGGTGAAGAAAGGGAAAGCAATGATGTGGTAATAAATGATGAGGGGACTGAGAGAGGGGACACGTGGACGAACACAATGGTGACACGTGGGGACTCTGAGAGTAGTGCGAACCAGAGTTCCAATGGGGAGTTACATTCTTGTTCTTCCATGGCTTCTGGCTTAGATGAAAAGTGGGATTGGGAGAGTGTCATGCAGTTGAATCATAATGATGAGTCAGTTACGTGGGAGCAAAATGAAAACCTGCTGACTTGGCTTTGGGAAGATGATGACTGGGAAAAGGATTTTCAGAGATTTGGAAAGATTGATAGTGAGGAACACAGTGATATGGTTTCTTGGTTTCTCTCTTGA 1194 0.4338 MGRAPCCEKVGLKKGRWTQEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISVEEENIIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKVYSFHGTSNKDISMQAQGIVDTPPKRKGGRTSRWAMKKNKTFTQKANKTPKQSATPQNKEHYPLPPTPSLESENLSSTIIDFMVFDPEKEESKVEREDLADGSSAGLYNQQIRGENGDRDELQVFDGEKETEDMLGRCQEAINGGEVLSFNDIMDTCVLEPSGFLKFGEERESNDVVINDEGTERGDTWTNTMVTRGDSESSANQSSNGELHSCSSMASGLDEKWDWESVMQLNHNDESVTWEQNENLLTWLWEDDDWEKDFQRFGKIDSEEHSDMVSWFLS* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03724 397 Gene3D - 71 116 - -
Rops8g03724 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops8g03724 397 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops8g03724 397 CDD SANT 16 61 IPR001005 -
Rops8g03724 397 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 201 - -
Rops8g03724 397 MobiDBLite consensus disorder prediction 151 175 - -
Rops8g03724 397 FunFam Myb transcription factor 11 67 - -
Rops8g03724 397 Gene3D - 11 67 - -
Rops8g03724 397 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops8g03724 397 MobiDBLite consensus disorder prediction 134 188 - -
Rops8g03724 397 FunFam Myb transcription factor 71 116 - -
Rops8g03724 397 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops8g03724 397 SMART sant 13 63 IPR001005 -
Rops8g03724 397 SMART sant 66 114 IPR001005 -
Rops8g03724 397 MobiDBLite consensus disorder prediction 205 234 - -
Rops8g03724 397 CDD SANT 71 112 IPR001005 -
Rops8g03724 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops8g03724 397 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops8g03724 397 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03724 Rops-Chr8 77641578 77645077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03724 1 161 MYB Transcription Factor Family AT5G49330 66.286 2.71e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g03724 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03724 K09422 - gmx:100814275 390.578