Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03718 ATGGCAACATGCCCTGCAAAGCCTCAAAGAAGCATGTCTGATCAAAATATTCATAGCTCACCACCAAAACTATTTGGTTTCCCACTAACAGAGCAAGAAGAATTTGCAGAAAGAAAATACGATGTTGGAGAGGACAGGAAATTCAGGTGCAACTATTGCAAGCGAGTATTCGCAAACTCACAGGCCTTAGGGGGCCACCAAAATGCTCACAAGAAAGAACGCCAAAGAGCAAGGCGTTTCCAAATCCACAATGATCATAGACGATCAATCAGATCTCCAGTTACACTAACACCCTCCATTTACTTACAACCCTCTTCCTCTGCCTCTACTACCCTCAATTCTGTAGCTACCATCTTTGATCCTCATCAAAGTCCCATTTTGATTCCTTCCTCAACAACCTTTCTTACTGCTCCCTGGCAGCTTTATGCGTCACCCACTCTACTGCAATCTGCTCCTGATGTAACTGAATTTTCTGATAAACTTCCACAGAGGGATGTTCCTGTTAATGTTGATGTCCATCTTAAATTATCTCTGTCTGGTTGA 543 0.4291 MATCPAKPQRSMSDQNIHSSPPKLFGFPLTEQEEFAERKYDVGEDRKFRCNYCKRVFANSQALGGHQNAHKKERQRARRFQIHNDHRRSIRSPVTLTPSIYLQPSSSASTTLNSVATIFDPHQSPILIPSSTTFLTAPWQLYASPTLLQSAPDVTEFSDKLPQRDVPVNVDVHLKLSLSG* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03718 180 MobiDBLite consensus disorder prediction 1 20 - -
Rops8g03718 180 Pfam C2H2-type zinc finger 48 73 - -
Rops8g03718 180 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Rops8g03718 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Rops8g03718 180 PANTHER ZINC FINGER PROTEIN 5 10 179 IPR044299 GO:0010090
Rops8g03718 180 Gene3D Classic Zinc Finger 31 97 - -
Rops8g03718 180 SUPERFAMILY beta-beta-alpha zinc fingers 45 75 IPR036236 -
Rops8g03718 180 MobiDBLite consensus disorder prediction 1 24 - -
Rops8g03718 180 FunFam Zinc finger protein 6 36 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03718 Rops-Chr8 77577965 77578507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03718 21 85 C2H2 Transcription Factor Family AT5G06650 44.000 1.80e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g03718 zf-C2H2_6 6.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03718 - - aprc:113861015 190.274