Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03713 ATGGCGATGAGAAATCGAACTCTAGAATTCAGGAAGCACAGAGACGCTGTGAAGAGCGTACGCGCTCCTCTCTCTTCTTCAGCATCTGCTTCCGGTGGTCCTGTCATTGAAATGGTTAGCACTTCGCTTCTTCGTTCCAATAATCGATCTTCCTATGCCCCTCTTAGCACTGATGATCCAGGTCCAGCCACCTCTAGAGATGCATTTACTGTGGGCATGCCGCCATCTTGGGTGGACGATTCCGAGGAAATAGCTACAAATATACAACGTGCTCGGATTAAAATGTCTGAGTTAACCAAAGTTCATGCAAAGGCTTTAATGCCCTCCTTTGGTGATGGCAAAGATGACCAGCGCCAGATTGAGACTCTCACCCAGGAAATTACATCTCTCCTCAGAAAGTCTGAAGTCAGGCTAAGAAGACTTTCCGCTGCTAGTGGATCTCCTGAGGATTCTAATCTTAGAAAAAATGTGCAGCGTTCACTTGCTACAGACCTTCAAAACCTGTCAATGGACCTCAGGCGAAAGCAGTCAGCATATTTGAAACGTTTGCAGCAGCAAAAAGAGGGTTATGATGGGGTTGACTTGGAGATGAACTTTAACAGGAGTAAAGTTGGATTTCAGGATGATGGATTCAGTGACATGGGTTTTAGTGAAGAGCAAATGACAAAGCTAAAGAAAAGTGAGCAGTTCTCAGAGGAAAGGGAAAGAGAGATTGAACAGGTCACTAAATCAGTCAATGAACTTGCTCAGATCATGAAGGATCTCTCTGTACTTGTGATAGACCAGGGTACAATTGTGGATAGAATTGACTACAACATTCAGAATGTTGCTACTTCCGTTGAGGAGGGCTTTAAGCAGTTGCAAAAGGCAGAGAGAACGCAGAAAAAAGGAGGGATGGTTATGTGTGCAACAGTGCTTGTTATAATGTGTTTTGTCATGCTAGTTCTCTTGATACTCAAGGAGATACTCTTTTAG 975 0.44 MAMRNRTLEFRKHRDAVKSVRAPLSSSASASGGPVIEMVSTSLLRSNNRSSYAPLSTDDPGPATSRDAFTVGMPPSWVDDSEEIATNIQRARIKMSELTKVHAKALMPSFGDGKDDQRQIETLTQEITSLLRKSEVRLRRLSAASGSPEDSNLRKNVQRSLATDLQNLSMDLRRKQSAYLKRLQQQKEGYDGVDLEMNFNRSKVGFQDDGFSDMGFSEEQMTKLKKSEQFSEEREREIEQVTKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATSVEEGFKQLQKAERTQKKGGMVMCATVLVIMCFVMLVLLILKEILF* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03713 324 MobiDBLite consensus disorder prediction 49 75 - -
Rops8g03713 324 SUPERFAMILY t-snare proteins 73 283 IPR010989 GO:0016020|GO:0016192
Rops8g03713 324 CDD SNARE_syntaxin16 232 289 - -
Rops8g03713 324 FunFam Syntaxin-43 74 282 - -
Rops8g03713 324 Gene3D - 73 282 - -
Rops8g03713 324 PANTHER SYNTAXIN 79 309 IPR045242 -
Rops8g03713 324 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 228 290 IPR000727 -
Rops8g03713 324 Pfam SNARE domain 264 316 IPR000727 -
Rops8g03713 324 SMART SynN_4 68 184 IPR006011 GO:0016020
Rops8g03713 324 SMART tSNARE_6 223 290 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03713 Rops-Chr8 77491829 77496369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03713 1 324 SNARE and Associated Proteins AT5G26980 69.909 3.32e-160 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03713 K08489 - gmx:100803629 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03713 8 77491829 77496369 Rops8g03713 8 77491829 77496369 ECH
Rops8g03713 8 77491829 77496369 Rops6g01911 6 36963027 36967436 ECH