Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03709 ATGTCCACCGATACCCCTAATATCAATCCCAGAGGTCTTCTCTGCAACGCTGCCTCCGGTGCAGCCGCTGGAGTTATTGCTGCCACATTTGTGTGTCCTTTAGATGTCATTAAAACTAGGTTTCAGGTTCATGGTGTACCGCAGCATGCTAATGGAAGTGTTAAAGGCAGTATAATAGTTGCTAGTTTGGAACAAATATTTCACAAGGAGGGGTTACGCGGCATGTACCGTGGACTGGCTCCCACTGTGCTAGCTTTACTTCCAAACTGGGCGGTTTATTTTACTATGTATGAGCAGCTCAAGAGCATTCTTCATTCTGATGATGAAAGCCATCATCTTACAATTGGAGCTAATATGATAGCTGCTTCTGGTGCTGGAGCTGCAACTACCATGTTTACAAATCCACTTTGGGTTGTCAAGACAAGACTTCAAACCCAGGGAATGAGACCTGGTGTTGTGCCATATAGGAGCACGCTATCTGCATTGAGGAGAATTGCACATGAGGAGGGCATTCGGGGGCTATACAGTGGCCTTGTACCTGCTCTGGCTGGTGTCAGTCATGTTGCCATCCAATTTCCAACGTATGAGAAAATAAAATTTTATCTTGCAAATCAAGATGACGCAGCAATCGATAAACTTGGTGCACGTGATGTTGCAATTGCTTCATCAGTCTCCAAAATTTTTGCGTCCACATTGACATATCCTCACGAGGTTGTGCGTTCCAGACTGCAAGAACAAGGGCACCACTCAGAGAAACGGTACTCTGGTATGATTGACTGTATTAAAAAGGTTTTTCAACAAGAAGGTGTTCCTGGTTTTTACCGTGGATGTGTCACCAACCTTCTGAGGACAACACCAGCTGCTGTGATCACATTCACCAGCTTTGAAATGATACACCGTTTTCTTGTTTCTCTTTTTCCTTCTGATCCACAGCATCATATTTTGTGA 948 0.4441 MSTDTPNINPRGLLCNAASGAAAGVIAATFVCPLDVIKTRFQVHGVPQHANGSVKGSIIVASLEQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTMYEQLKSILHSDDESHHLTIGANMIAASGAGAATTMFTNPLWVVKTRLQTQGMRPGVVPYRSTLSALRRIAHEEGIRGLYSGLVPALAGVSHVAIQFPTYEKIKFYLANQDDAAIDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGMIDCIKKVFQQEGVPGFYRGCVTNLLRTTPAAVITFTSFEMIHRFLVSLFPSDPQHHIL* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03709 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 301 IPR018108 -
Rops8g03709 315 SUPERFAMILY Mitochondrial carrier 13 297 IPR023395 -
Rops8g03709 315 FunFam NAD+ transporter 111 306 - -
Rops8g03709 315 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Rops8g03709 315 PRINTS Mitochondrial carrier protein signature 78 98 IPR002067 GO:0055085
Rops8g03709 315 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085
Rops8g03709 315 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Rops8g03709 315 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085
Rops8g03709 315 Pfam Mitochondrial carrier protein 13 106 IPR018108 -
Rops8g03709 315 Pfam Mitochondrial carrier protein 113 204 IPR018108 -
Rops8g03709 315 Pfam Mitochondrial carrier protein 219 303 IPR018108 -
Rops8g03709 315 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 1 109 - -
Rops8g03709 315 Gene3D Mitochondrial carrier domain 1 109 IPR023395 -
Rops8g03709 315 Gene3D Mitochondrial carrier domain 110 304 IPR023395 -
Rops8g03709 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 103 IPR018108 -
Rops8g03709 315 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 14 305 IPR044712 GO:0006862|GO:0055085
Rops8g03709 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03709 Rops-Chr8 77461458 77466715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03709 1 315 Chloroplast and Mitochondria Gene Families AT2G47490 75.238 3.43e-165 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03709 K15115 - gmx:100500213 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03709 8 77461458 77466715 Rops8g03709 8 77461458 77466715 ECH