Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03702 ATGGTGTCGTTGAAACTACAGAAGCGTCTCGCCGCAAGTGTGCTCAAGTGTGGAAGAGGCAAAGTTTGGCTTGACCCCAATGAAGTCAATGAAATCTCCATGGCCAATTCTCGTCAAAACATTAGGAAGTTGGTCAAGGATGGGTTTATTATTAGGAAGCCAACCAAGATTCACTCTCGTTCACGGGCTCGCAGGATGAAGGAGGCCAAGAGGAAGGGACGCCACTCCGGATATGGTAAGCGTAAGGGTACCCGGGAGGCAAGGCTTCCTACCAAAGTACTTTGGATGAGGAGGATGCGTGTGCTCAGAAGATTACTTCGTAAGTACAGGGAATCAAAGAAAATTGACAAACACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTTTTCAAGAACAAGAGAGTCTTAATGGAGAGCATTCACAAGTCCAAGGCAGAGAAGGCAAGAGAAAAGACATTGTCTGATCAGTTTGAGGCAAAGCGTGCAAAGAACAAGGCAAGCAGGGAAAGGAAAATCGCAAGGAGGGAGGAGCGCTTGGCCCAAGGTCCTGGTGTCAAGCCATCAGAATCCAGTGCTCCACCTGCTACAGCACCCCAGTCTGCCCAAGTGCCAAAGAAATCCAAGAAATGA 636 0.478 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGVKPSESSAPPATAPQSAQVPKKSKK* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03702 211 PANTHER 60S RIBOSOMAL PROTEIN L19 1 186 IPR039547 GO:0003723|GO:0003735|GO:0022625
Rops8g03702 211 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Rops8g03702 211 MobiDBLite consensus disorder prediction 194 211 - -
Rops8g03702 211 FunFam Ribosomal protein L19 57 191 - -
Rops8g03702 211 MobiDBLite consensus disorder prediction 57 85 - -
Rops8g03702 211 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Rops8g03702 211 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Rops8g03702 211 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Rops8g03702 211 Gene3D - 57 186 - -
Rops8g03702 211 FunFam Ribosomal protein L19 1 56 - -
Rops8g03702 211 MobiDBLite consensus disorder prediction 149 211 - -
Rops8g03702 211 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Rops8g03702 211 MobiDBLite consensus disorder prediction 149 184 - -
Rops8g03702 211 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Rops8g03702 211 MobiDBLite consensus disorder prediction 57 79 - -
Rops8g03702 211 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03702 Rops-Chr8 77359681 77365608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03702 1 211 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.360 4.11e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03702 K02885 - cit:102616399 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03702 8 77359681 77365608 Rops8g03702 8 77359681 77365608 ECH