Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03701 ATGTGTGGTGGTGCTATCATAGCTGAGTTCATCCCTCGCCATCGTTCTCGCCTCCTTACCGCCTCTGAACTGTGGCCTAACACAGTTGGCAAGCAGGATGAATTGCAGTTAGAACAATCAGCCCCTCTCAAAAGGTCCCAATTACCTTCCCCAGCTAATGAGCAAGTTGAGAAGCCCCCCGCCAAGAGGCAGAGGAAAAACCTTTACAGAGGGATTAGACAGCGACCATGGGGCAAATGGGCCGCGGAGATTCGTGATCCAAGAAAAGGGGTTCGTGTTTGGCTTGGTACCTTCAACACTGCTGAAGAAGCTGCCAGAGCCTATGACAGGGAAGCTCGAAAAATCCGTGGCAAGAAAGCCAAAGTAAATTTCCCAAATGAGGATGATGACCACTACTCCATTCAAGCTCCTCCTCCTGTTCCACTCCCACACCGGAATCTCTATCAACAACAACAAAACTGTTGCAGTCTGAATCTGGAGTTTGGTTATGATCTGAACCCAGAAGGGTCATTTCCTTTTCATGGCGGGGATCCAGTTTTTGCTTCTGTTGATGAAAGTTGTGGAAATGGATCTGTTGCATCAGGTTCAGAGGGTGCTCACTCGACAACAGAGTTCATGAGCTCCAATAACTTTGGCCAGGAGAAGATGAAGGATAAAGTAGAAGGGGTTGGAAATGAAATGGCTGAAAACCAAATGGAGAAGCTTTCAGAGGAGTTGATGGCGTTTGACAACTACATGAGGTTTTATCAGATTCCGTGCTATGATGGCCAATCAGCTGCATCAAATGGCGTTCAGGAAAATGTGGTTGAAGATTTCTGGACCTTCGATGCTGAGACTGTTTCTGCTTCTGTTGCTTCTTCAGCCCCGTGA 870 0.4759 MCGGAIIAEFIPRHRSRLLTASELWPNTVGKQDELQLEQSAPLKRSQLPSPANEQVEKPPAKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDDHYSIQAPPPVPLPHRNLYQQQQNCCSLNLEFGYDLNPEGSFPFHGGDPVFASVDESCGNGSVASGSEGAHSTTEFMSSNNFGQEKMKDKVEGVGNEMAENQMEKLSEELMAFDNYMRFYQIPCYDGQSAASNGVQENVVEDFWTFDAETVSASVASSAP* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03701 289 Gene3D AP2/ERF domain 68 126 IPR036955 GO:0003700|GO:0006355
Rops8g03701 289 MobiDBLite consensus disorder prediction 44 68 - -
Rops8g03701 289 CDD AP2 69 126 IPR001471 GO:0003700|GO:0006355
Rops8g03701 289 FunFam Ethylene-responsive transcription factor 2 67 126 - -
Rops8g03701 289 SUPERFAMILY DNA-binding domain 68 126 IPR016177 GO:0003677
Rops8g03701 289 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Rops8g03701 289 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Rops8g03701 289 PANTHER DNA-BINDING DOMAIN 47 219 IPR044808 GO:0003700|GO:0009873
Rops8g03701 289 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
Rops8g03701 289 Pfam AP2 domain 69 117 IPR001471 GO:0003700|GO:0006355
Rops8g03701 289 Coils Coil 225 245 - -
Rops8g03701 289 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03701 Rops-Chr8 77354774 77355979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03701 1 126 AP2-EREBP Transcription Factor Family AT3G16770 54.412 1.61e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g03701 AP2 8.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03701 K09286 - gmx:100819416 326.25