Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03685 ATGCATGTGAATTCTCTAACTAAATTGAATGGGACAAACCATGAAGATTGTGAACATTCTACAAAACTATTTCTTGCAGTATTTGGTGTCGATTTTGCTCTCATTGAGGATGAGCCACCGAAACCTAACAATGCATCTTCTGACGTGGACAAAAGAAAATATGAAAAATTGGAGCAGCGTCTCCGGCAGTGGCTTAGGGTTTTACTCACTCCGGTCATCGAGAAGCTCACTCTTCCATTTCAAGAGCGCAAGTTAAAAATGTCGGAAGTGAATGCAGGCACTGAAATCCCTCCTCAAAACATGACAATCTACATTAACAACCTTAACGAAAAGATTAAGATTGAAGAGTTGAAGAAGTCTTTGCACGCTGTTTTCAGTCAGTTTGGGAAGATACTTGAGGTGTTAGCTTTCAAGACCCTAAAGCACAAGGGTCAAGCTTGGGTGGTATTTGAGGATGCCTCTTCTGCTTCCAATGCCCTTAGGCAAATGCAAGGTTTCCCCTTCTATGATAAGCCCATGAGGATACAGTATGCAAAGACTAAATCTGATATAATAGCAAAAGCAGATGGTACTTTTGTTCCTAGGGAAAAACGTAAGAGGCATGATGACAAAGGCAAAAAACGAAAGGACCAACATGATGCTAATTTAGCTGGAATGGGCCTAAATCCTGCTTATTCTGGTGCTTACGGTGCAACACCTGCTATACCTTATCCAGGTGGTGCAAAATCTATGGTACCTGAGGCTCCTGCACCACCAAATAATATTCTCTTTATTCAGAATCTTCCAAATGAAACAACTCCCATGATGCTTCAAATGCTCTTTCTTCAATATCCTGGATTCAAGGAAGTTAGAATGGTTGAAACAAAGCCAGGAATTGCCTTTGTGGAATATGGAGATGAGATGCAATCCACAGTGGCTATGCAAGCGCTGCAAGGTTTCAAGATAACCCCACAAAACCCTATGTTGATAACTTATGCCAAGAAATAG 987 0.4113 MHVNSLTKLNGTNHEDCEHSTKLFLAVFGVDFALIEDEPPKPNNASSDVDKRKYEKLEQRLRQWLRVLLTPVIEKLTLPFQERKLKMSEVNAGTEIPPQNMTIYINNLNEKIKIEELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVVFEDASSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDDKGKKRKDQHDANLAGMGLNPAYSGAYGATPAIPYPGGAKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03685 328 Gene3D - 242 328 IPR012677 -
Rops8g03685 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 328 IPR000504 GO:0003723
Rops8g03685 328 CDD RRM2_U1A_like 252 324 - -
Rops8g03685 328 MobiDBLite consensus disorder prediction 193 216 - -
Rops8g03685 328 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 168 328 - -
Rops8g03685 328 FunFam U1 small nuclear ribonucleoprotein A 94 200 - -
Rops8g03685 328 FunFam U2 small nuclear ribonucleoprotein B'' 245 328 - -
Rops8g03685 328 CDD RRM1_U1A_like 102 179 - -
Rops8g03685 328 Gene3D - 96 199 IPR012677 -
Rops8g03685 328 SMART rrm1_1 102 176 IPR000504 GO:0003723
Rops8g03685 328 SMART rrm1_1 255 324 IPR000504 GO:0003723
Rops8g03685 328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 315 IPR000504 GO:0003723
Rops8g03685 328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Rops8g03685 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 180 IPR000504 GO:0003723
Rops8g03685 328 SUPERFAMILY RNA-binding domain, RBD 97 317 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03685 Rops-Chr8 77106255 77113007 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03685 83 192 Eukaryotic Initiation Factors Gene Family AT2G23350 26.786 3.66e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03685 K11091 - gmx:100500002 426.402