Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03677 ATGAGTAGACGTGGGAGCAGAACTGTCTACGTTGGAAATCTACCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTCTGAAGTATGGACACATTACTCACATTGACCTAAAGGTTCCGCCAAGGCCTCCTGGCTATGCGTTCGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGGCGTGATGGTTATGATTTTGATGGGCACCGGTTACGGGTCGAGCCTGCACATGGTGGGCGTGGTCATTCGTCTTCCAAAGATCGACATAGTAGTCACAGCAATGGTCGGGGTGGACGTGGAGTATCCAGGCGCTCTGAATATCGTGTTCTAGTCACTGGATTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAGCAGGGGATGTCTGCTTTTCCCAGGTTTTTCATGATGGAAGAGGTACTACTGGGATTGTGGATTACACCAACTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCTAGGGCTTATGTTCGGGTGAGGGAATATGATTCAAGGCGGGACTCCTCTAGAAGTCCTAGTCGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGTCGCAGTCGTAGCCGTAGTTACAGTCGGGGCCGTAGCCAAAGCAAATCTCCAAAGGGTAAATCTTCACAGCGGTCACCAGCTAGATCTCCGTCAAGATCTGCTTCTCGTTCTCGCTCGAGGTCAAGGTCCCGTTCTTTATCAGGATATGGAAACTTGCAGCATACTGGAAATTGGAAATTAGGAACTTGGTGGAATTTGGTTCAATTGCCTGCAACTCAATTTGTTGTGGAGATTGGGAACCAACGAGATCATGGATTGCCATTTTAG 897 0.4716 MSRRGSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSKDRHSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRAYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSYSRGRSQSKSPKGKSSQRSPARSPSRSASRSRSRSRSRSLSGYGNLQHTGNWKLGTWWNLVQLPATQFVVEIGNQRDHGLPF* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03677 298 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 6 255 - -
Rops8g03677 298 CDD RRM1_SF2_plant_like 8 78 - -
Rops8g03677 298 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Rops8g03677 298 CDD RRM2_SF2_plant_like 111 186 - -
Rops8g03677 298 Gene3D - 2 110 IPR012677 -
Rops8g03677 298 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Rops8g03677 298 SUPERFAMILY RNA-binding domain, RBD 6 178 IPR035979 GO:0003676
Rops8g03677 298 SMART rrm1_1 8 78 IPR000504 GO:0003723
Rops8g03677 298 SMART rrm1_1 112 183 IPR000504 GO:0003723
Rops8g03677 298 MobiDBLite consensus disorder prediction 73 110 - -
Rops8g03677 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Rops8g03677 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Rops8g03677 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Rops8g03677 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Rops8g03677 298 Gene3D - 111 188 IPR012677 -
Rops8g03677 298 MobiDBLite consensus disorder prediction 73 107 - -
Rops8g03677 298 MobiDBLite consensus disorder prediction 186 261 - -
Rops8g03677 298 MobiDBLite consensus disorder prediction 215 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03677 Rops-Chr8 77035853 77042368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03677 2 195 Eukaryotic Initiation Factors Gene Family AT4G34110 24.138 9.57e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03677 K12890 - cave:132187262 342.813