Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03674 ATGAAGTTCTGCAAAAAATACCAAGAGTACATGCAAGGCCAGGAGAAGAAGCTTCCTGGGGTTGGCTTCAAGAAGCTCAAGAAGATCTTGAAGAAGTGCAGGAGAGACTGTCAATCCATGAATGGTCTTAATGAATCAGCCCTTGGTGTCAGAAACTGCCCTGATCATTGCCCAGTGTGTGATGGGACCTTCTTCCCTTCCCTTCTCAATGAAATGTCAGAGATAGTTGGCTGCTTTAATCAGCGTGCGCAGAAATTGCTGGAGCTCCATCTAGCTTCTGGCTTTAGAAAGTGCTTTTTCTGGTTCAAAGGCAAATTACAAGGGAACCATACTGCTCTAATTCAAGAAGGCAAAGATCTGGTTACTTATGCACTCATAAATTCCATTGCAATTCGAAAAATACTGAAAAAGTATGATAAGATTCATTATTCTAAGCAAGGGCAAGTATTCAAGTCGCAGATCCAGAGTATGCACAAGGAAATTCTCCAAAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCACATCAATTTAAGGGAAACCAAGGCCAAGTCAAGGAAGGCACCTGCTTTGTTCGATGGATGTTCCCTCGCATTTAAGGATGGAAAACCATCTCTTACTTGTGAGCTCTTTGATTCTATCAAAATTGATATTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTGTCACTGACGTGCGGCCATATATTCTGCTATATTTGTGCATGCTCGGCTGCATCAGTATCTATTGTCGATGGACTTAAGGCAGCGGATCCTAAAGAGAAATGTCCTCTCTGCCGAGAGGGTGCAGTTTATGAAGGTGCTGTGCACTTGGAAGAACTAAAAATTCTGTTAGGCCGAAGCTGTAAGGAATACTGGGAGCAGAGGCTTCAGACAGAGAGAGCAGAGAGAGTTAAGCAAATAAAGGAACACTGGGAATCACAGTGCAGGGTATTCGTGGGCGTCTAA 978 0.4356 MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKKCRRDCQSMNGLNESALGVRNCPDHCPVCDGTFFPSLLNEMSEIVGCFNQRAQKLLELHLASGFRKCFFWFKGKLQGNHTALIQEGKDLVTYALINSIAIRKILKKYDKIHYSKQGQVFKSQIQSMHKEILQSPWLCELMAFHINLRETKAKSRKAPALFDGCSLAFKDGKPSLTCELFDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGLKAADPKEKCPLCREGAVYEGAVHLEELKILLGRSCKEYWEQRLQTERAERVKQIKEHWESQCRVFVGV* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03674 325 CDD SPX_BAH1-like 2 148 - -
Rops8g03674 325 Pfam Zinc finger, C3HC4 type (RING finger) 218 271 - -
Rops8g03674 325 ProSiteProfiles Zinc finger RING-type profile. 221 270 IPR001841 -
Rops8g03674 325 CDD RING-HC_BAH1-like 211 284 - -
Rops8g03674 325 SUPERFAMILY RING/U-box 214 273 - -
Rops8g03674 325 ProSitePatterns Zinc finger RING-type signature. 236 245 IPR017907 -
Rops8g03674 325 SMART ring_2 221 269 IPR001841 -
Rops8g03674 325 ProSiteProfiles SPX domain profile. 1 152 IPR004331 -
Rops8g03674 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 IPR033326 -
Rops8g03674 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 323 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03674 Rops-Chr8 77001977 77004857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03674 218 270 C3H Transcription Factor Family AT4G28270 41.379 1.28e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03674 K16275 - gmx:100787904 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03674 8 77001977 77004857 Rops8g03674 8 77001977 77004857 ECH