Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03672 ATGTCCTCTGCATCTGAAACTTGGTTCACTTCCCTCTCATGTACATTCCCTGTGAATCAAACCTCAGGGGATTCGTTTATCTCAGCTCTATTTCAATGGTTGAGATTCATTTTCCTCTCTCCATGTCCTCAGAGAGTTCTGTTATCTGCGGTTGATGTCCTACTCCTGTTCAGCCTCTTTGTTTTGGCTGTCATGAAGCTCTATACAAGGTTCACTTCCAATGGTGACTCCCCCACTGTTCTCAACAAGCCCCTCATCAGCAAAAACAGATCTTTTGTCAGAACCACTATATGGTTTAAGCTAACTTTAACTGCAACGGTTGTTTTGGCCATATTGTATACTGTTTCTTGCGTTCTGGTATTTAGCAGTTCCACCAAGCTTCCATGGAAGCAAGTTGATGGGATATTTTGGTTACTCCAGGCCATAACTCAAGCAGTACTTGCAATCTTAATCATTCATGAGAAAAGATTTGAAGCTGTTTCACACACACTGTCGATTAGACTTTATTGGGTTGCAAATTTCGTTATCATTTACTTGTTCTCAGCATCTGGGGTTATACGTTTTGTATCTGTAGATTTGGATGAAACCAAAGACTTCATCTTTAAGATTGATGACGTGGTCTCTTTTATTTCACTCCCTTTTTCACTATTTCTTCTCTTTGTGGCGGTTAAAGGATCCACTGGTGTCATATCAACAGAAGAAACACAACCACTTATTGACGAGGAAACAAAGCTATATGATGATACTGTGAGCAAATCCGAGGTTACTGGTTTTGCTTCAGCTTCTATACTATCCAAGGCATTTTGGATTTGGATAAACCCCTTATTGAGTAAAGGTTACAAATCACCACTGAAAATTGATGAGATTCCAATACTTTCCCCTGAGCATAGAGCTGAGAGGATGTCAGCTATGTTTGAAGCAAAATGGTCTAAAACAAACGAGGGGTGTAAGCACCCAGTTAGAATCACTTTGATTCGGTGCTTCTGGAAGAATTTAGCCTTCACTGCTTCCCTTGCCTTTATCAGGCTTTGTGTCACGTTTGTAGGACCAATGCTCATACAAAGTTTCATTGATTTCACTTCAGGGAAGAGAAGCTCTGTATATGAAGGATACTACCTTGTGTTGATTCTTCTCGTTGCTAAATTTATTGAAAGCATGACCATTCATCATTTCAACTTCAACTCTCAGAAGCTTGGGATGCTTATACGATGCACTCTTACTCCCTCTTTGTACAAGAAGGGGTTAAAGCTTTCATTCTCTGCTCGGCAGGATCATGGTGTAGGAACCATCGTGAATTACATGGCGGTTGATACTCAGCAACTATCTGATATGATGCTTCAGTTACATTCTGTCTGGATGATGCCACTTCAAGTTTGTATCGGCTTATTTCTGCTTTACAATTGTCTAGGTGCCTCAGTAGTTACTCCGGTGCTTGGAGTTATTGCTGTTCTTGGGTTTGCTGTGCTTAGTAACAGTAGAAACAACATTTTCCAATTTAATGTAATGAAGAACCGTGACTCAAGAATGAAAGCTGTGAATGAGATGCTTAATTACATGCGTGTGATCAAGTTTCAGGCTTGGGAAGAACATTTCAATGAGAGAATTCTGGGTTTCCGTGAGTCAGAATATGGGTGGCTTTCCAAGTTGATGTTCTCAATTTGTGGCAATTTAGTTGTGATGTGGAGCGCACCATTATTGATAACATCTCTCACGTTTGGTACGGCTCTTTGGCTTGGAGTTCGACTTGATGCTGCAACGGTCTTCACCACAACAACAGTCTTCAAGATGTTGCAGGAACCTATTAGGACATTCCCACAGGCTATGATATCTCTTTCTCAAGCAATGATATCACTGGACAGGTTAGATAGGTTCATGTTAAGCACAGAATTGTCCAATGATTCTGTTGAGAGAGAAGAAGGTGGTGGTGGACAAACAGCAGTGGAAGTCATAGATGGAACATTTTGTTGGGATGATGATAACCTGCACCAGGACTTAAAAAATATTAATTTGGAAATCAAAAAGGGGGATCTTACAGCAATTGTTGGGACTGTGGGGTCAGGAAAGTCATCTCTCCTTGCATCAATTCTTGGTGAGATGCACAAAATTTCCGGAAAGGTTCGGGTTTGTGGGAGTGTTGCTTATGTTGCACAAACATCCTGGATTCAGAATGGGACCATTGAAGAAAACATTCTCTTTGGTTTACCAATGGAAAGACATAAGTACAATCAAGTTATCAAGGTGTGTTGCTTGGAGAAAGATTTGGAAATGATGGATTATGGGGATAAGACAGAGATCGGAGAGCGTGGCATCAACCTAAGTGGAGGCCAAAAGCAGCGTATACAACTTGCCAGGGCCATATATCAAGACTCTGATATTTATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGCTCTGAAATATTTAAGGAATGCGTGAGGGGAGTTCTAAAAGACAAGACCGTTATTCTTGTAACACATCAAGTAGATTTCCTACATAATGTGGATCTTATACTAGTGATGAAGGATGGTATGATAGTCCAATCTGGGAAATACGATGATATACTAGATTGTGGAATCGATTTTAAAGCTCTGGTAGCTGCACATGAGACCTCCATGGAACTAGTAGAGCATGGTGCGGTCATAACTGGTGAGAATTTGAACAAATCACCGAAATCTCCAAAGGAAGCTTCTACTTACAAGGGAACCAATGGTGAAAGCAATTCTCTTGACCAGCCAGAGTCTGTCAAGAAAAGTTCTAAACTCATCAAAGAAGAAGAGAGAGAAACTGGCAAAGTGAGCTTACATATCTATAAACTCTACTGCACTGAGGCTTTTGGGTGGTGGGGCATCACAGGAGTGATGTTTCTTTCTTTGTTATGGCAAGGGTCTTTGATGGCAGGGGATTATTGGCTGGCATATGAAACCTCAGAAGAGCGTGCCCAAATGTTTAACCCTTTCCAGTTTATTACCATATATGCTATTATTGCTGTTGTTTCAGTTATCTTGTTAGTGATAAGATACTACTCCTTCACATTCTTGGGGCTAAAGACAGCACAACTTTGCTTCACACAAATTCTTCATAGCATCTTGCATGCGCCCATGTCTTTCTTTGATACTACGCCGTCTGGGAGAATTCTTAGTAGGGCATCCACTGATCAGGCCAATGTTGATGTCTCTCTCCCATTGTTCATGGGAATTGTTACTGCCATGTACATTACAGTGCTCAGCATCCTCATAGTCATCTGTCAAAATTCTTGGCCAACAGTGCTCTTGATAATTCCTCTTGTTTGGTTGAATATATGGTACCGGAGTTACTTTCTTGCTTCATCTCGTGAATTAACTCGCCTTGATTCAATTACCAAAGCACCTGTTATTCATCACTTCTCTGAAAGCATTGCGGGGTTCATGACAATACGCGCATTTAGAAAGCAAAAGAAATTTTGTGAAGAAAACCTCAAACGGGTGAATGCTAATTTGAGAATGGATTTCCACAACAATGGTTCCAATGAGTGGTTGGGATTACGCTTAGAATTGCTTGGAAGCTTTGTCTTTTGCATGTCTACTATGTTCATGATCATCTTACCCAGCAGTATCATAAAACCAGAAAATGTTGGTTTATCTCTCTCTTATGGGTTGTCCTTAAATAGCGTCTTGTTCTGGTGTGTATACATGAGTTGTTTCTTGGAGAACAAAATGGTATCTGTTGAGAGGATAAAGCAGTTTACAAATATTCCATCAGAACCAGCATGGAATATCAAAGATCGTCTGCCTCCTTCAAATTGGCCAGGTCAAGGCAATGTAGATATCAAAGACTTGCAGGTCAGATATCGTCCAAACACTCCACTGGTTCTAAAAGGAATTACTTTGAGCATTAGTGGAGGAGAAAAGATTGGTGTTGTTGGTCGAACTGGGAGTGGAAAATCAACTTTAATTCAAGTTTTCTTTAGGCTGGTGGAACCTTCAGGAGGGAAAATAATTATTGATAACATTGACATATCCATCTTGGGGCTTCATGATCTTAGATCACGGTTTGGTATCATTCCTCAAGAGCCAGTCCTTTTCGAGGGAACTGTCAGAACCAACGTTGATCCAACTGGACAGCATACAGATGAAGAGATATGGAAGAGCTTGGAACGCTGTCAACTAAAAGAGATCGTGGCTACTAAGCCAGGAAAACTTGATTCTTTAGTGGTGGATAGTGGAGAGAACTGGAGTGTGGGGCAGAGACAGTTGCTTTGTTTAGGGAGGGTTATGCTTAAGCGAAGCCGGCTCTTGTTTATGGATGAGGCAACTGCTTCTGTTGATTCTCAAACCGATGGTGTGGTTCAAAAGATAATTAGAGAGGACTTTGCAGCCTGTACCATCATCAGCATTGCTCATAGAATCCCCACAGTTATGGACTGTGATAGAGTTTTAGTTGTAGATGCAGGGCGAGTGAAAGAATTCGACAAGCCCTCTAACTTGCTCCAGAGGCCATCTCTCTTTGGGGCATTAGTTCAAGAGTATGCCAATCGCTCCATTGGACTATAA 4539 0.4111 MSSASETWFTSLSCTFPVNQTSGDSFISALFQWLRFIFLSPCPQRVLLSAVDVLLLFSLFVLAVMKLYTRFTSNGDSPTVLNKPLISKNRSFVRTTIWFKLTLTATVVLAILYTVSCVLVFSSSTKLPWKQVDGIFWLLQAITQAVLAILIIHEKRFEAVSHTLSIRLYWVANFVIIYLFSASGVIRFVSVDLDETKDFIFKIDDVVSFISLPFSLFLLFVAVKGSTGVISTEETQPLIDEETKLYDDTVSKSEVTGFASASILSKAFWIWINPLLSKGYKSPLKIDEIPILSPEHRAERMSAMFEAKWSKTNEGCKHPVRITLIRCFWKNLAFTASLAFIRLCVTFVGPMLIQSFIDFTSGKRSSVYEGYYLVLILLVAKFIESMTIHHFNFNSQKLGMLIRCTLTPSLYKKGLKLSFSARQDHGVGTIVNYMAVDTQQLSDMMLQLHSVWMMPLQVCIGLFLLYNCLGASVVTPVLGVIAVLGFAVLSNSRNNIFQFNVMKNRDSRMKAVNEMLNYMRVIKFQAWEEHFNERILGFRESEYGWLSKLMFSICGNLVVMWSAPLLITSLTFGTALWLGVRLDAATVFTTTTVFKMLQEPIRTFPQAMISLSQAMISLDRLDRFMLSTELSNDSVEREEGGGGQTAVEVIDGTFCWDDDNLHQDLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVRVCGSVAYVAQTSWIQNGTIEENILFGLPMERHKYNQVIKVCCLEKDLEMMDYGDKTEIGERGINLSGGQKQRIQLARAIYQDSDIYLLDDVFSAVDAHTGSEIFKECVRGVLKDKTVILVTHQVDFLHNVDLILVMKDGMIVQSGKYDDILDCGIDFKALVAAHETSMELVEHGAVITGENLNKSPKSPKEASTYKGTNGESNSLDQPESVKKSSKLIKEEERETGKVSLHIYKLYCTEAFGWWGITGVMFLSLLWQGSLMAGDYWLAYETSEERAQMFNPFQFITIYAIIAVVSVILLVIRYYSFTFLGLKTAQLCFTQILHSILHAPMSFFDTTPSGRILSRASTDQANVDVSLPLFMGIVTAMYITVLSILIVICQNSWPTVLLIIPLVWLNIWYRSYFLASSRELTRLDSITKAPVIHHFSESIAGFMTIRAFRKQKKFCEENLKRVNANLRMDFHNNGSNEWLGLRLELLGSFVFCMSTMFMIILPSSIIKPENVGLSLSYGLSLNSVLFWCVYMSCFLENKMVSVERIKQFTNIPSEPAWNIKDRLPPSNWPGQGNVDIKDLQVRYRPNTPLVLKGITLSISGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGKIIIDNIDISILGLHDLRSRFGIIPQEPVLFEGTVRTNVDPTGQHTDEEIWKSLERCQLKEIVATKPGKLDSLVVDSGENWSVGQRQLLCLGRVMLKRSRLLFMDEATASVDSQTDGVVQKIIREDFAACTIISIAHRIPTVMDCDRVLVVDAGRVKEFDKPSNLLQRPSLFGALVQEYANRSIGL* 1513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03672 1512 SUPERFAMILY ABC transporter transmembrane region 323 625 IPR036640 GO:0005524|GO:0016020
Rops8g03672 1512 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1270 1504 IPR003439 GO:0005524
Rops8g03672 1512 Pfam ABC transporter 665 798 IPR003439 GO:0005524
Rops8g03672 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 647 867 IPR027417 -
Rops8g03672 1512 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 333 613 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g03672 1512 Gene3D ABC transporter type 1, transmembrane domain 322 622 IPR036640 GO:0005524|GO:0016020
Rops8g03672 1512 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 259 1505 - -
Rops8g03672 1512 SUPERFAMILY ABC transporter transmembrane region 950 1250 IPR036640 GO:0005524|GO:0016020
Rops8g03672 1512 SMART AAA_5 674 855 IPR003593 GO:0016887
Rops8g03672 1512 SMART AAA_5 1296 1480 IPR003593 GO:0016887
Rops8g03672 1512 Gene3D - 1254 1503 IPR027417 -
Rops8g03672 1512 CDD ABCC_MRP_domain2 1268 1488 - -
Rops8g03672 1512 Gene3D ABC transporter type 1, transmembrane domain 916 1251 IPR036640 GO:0005524|GO:0016020
Rops8g03672 1512 MobiDBLite consensus disorder prediction 888 924 - -
Rops8g03672 1512 Pfam ABC transporter 1287 1435 IPR003439 GO:0005524
Rops8g03672 1512 ProSitePatterns ABC transporters family signature. 772 786 IPR017871 GO:0005524|GO:0016887
Rops8g03672 1512 CDD ABC_6TM_ABCC_D2 953 1245 IPR044726 GO:0140359
Rops8g03672 1512 FunFam ABC transporter C family member 4 630 888 - -
Rops8g03672 1512 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 647 870 IPR003439 GO:0005524
Rops8g03672 1512 CDD ABC_6TM_ABCC_D1 334 621 IPR044746 GO:0140359
Rops8g03672 1512 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 955 1233 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g03672 1512 MobiDBLite consensus disorder prediction 888 918 - -
Rops8g03672 1512 Pfam ABC transporter transmembrane region 990 1198 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g03672 1512 Pfam ABC transporter transmembrane region 338 599 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g03672 1512 FunFam ABC transporter C family member 10 317 629 - -
Rops8g03672 1512 Gene3D - 623 884 IPR027417 -
Rops8g03672 1512 FunFam ABC transporter C family member 3 1253 1504 - -
Rops8g03672 1512 Coils Coil 1141 1161 - -
Rops8g03672 1512 FunFam ABC transporter C family member 5 916 1251 - -
Rops8g03672 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1263 1503 IPR027417 -
Rops8g03672 1512 CDD ABCC_MRP_domain1 647 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03672 Rops-Chr8 76975017 76981887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03672 643 858 Calmodulin-binding Proteins AT2G36910 31.034 9.01e-23 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03672 - K05666 gmx:100808752 2361.64