Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03651 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGAGAAGAAGTTCAGCAAGAAAGTGAGCAGCAACAGCTACAAAGCCACCTCCATGACTCAAGTTCAGGACCATCTGGTGCTTGCAATAGCAATGATCCTAATGCTGAAGTTGTTGCTTTATCACCAACTACATTAATGGCAACAAATAGATTCGTCTGTGAGATATGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTAAGGCAAAGAACAAGCACTGAAGTGAAGAAACGGGTCTATGTGTGCCCTGAGCCATCATGTGTCCACCATAACCCAGCTCGTGCATTAGGAGATCTCACTGGCATCAAAAAGCATTATAGCCGCAAACATGGTGAGAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCTGTTCAATCTGATTGGAAGGCCCACCAGAAAACCTGTGGTACTAGGGAATACAAATGTGATTGTGGAACCATATTTTCCAGGAGAGATAGTTTCATTACCCACAGAGCTTTCTGTGATGCACTAACTGAGGAAAATAACCGAGTGAACCAAGGATTAACGAGTGGCATGCCACCAAACTTGCAAAGTCAAATGCCTGATCTTATGTCCACCATGCCTCTAAAAGCTAGTTCCAACACTGCATCAGAATTCAACGACCATGACCCTAAGAACTCACTCAAGTCACCCCCACAAGAACTTGTCCCAATACCATTCAGGTCCATGAGTATGGGTGGAGGCATGTTCTCCACCAATGCTGGTGCACTTTTTGGTGGTCCAAAAAACATGTCACCCTCTTCTTCCAGCCTTCAGCTCAGTTCCAACAACTCCTCTGGCTTCAATTACTTGCAAGATAGCAAAAACGGAGCACTAATATCTGGCTCAGCTCAGATGTCTGCAACAGCTTTATTACAGAAAGCAGCTCAAATGGGTGCTAATGCAAGCAATAGTGTTAACTCCCCCATGATGCAAAAAAGCTTTGTTAGTAGCATGGCTGGTCCTGATCAGGTTTCTTCCACTAGACCACCATATTCTGGTGCCATCATGCAGCATAACCACTCCTCATATGAGCACTTCCCTCAGCAGCCTGATCTATCCAACATGGTTGGGGTTAGTGGTGCTGGAGCATTCACCAACCAACTGTTTCAGAAAGGACAAGAAGAAGTTTCACAACTATTTAATACCAACAATACTGGATCTACAATGAATGATATGGGAATGTTTAGCCAAATGTCCGTGGGAAGTGACCACCACAACCAAGGATTGATGAAGAATGTGGAACAAGAGGTTGGTAATTTTTCAAGTTTGATGCATGGAAGAGATGTAGCTGAAAATAACCCAATGGAGCCACCAAGGTTTGGAGGGAGTGACATGACAACAGTTCATGATTTCTTGGGCATTGGGGGTTCAACTTCAAGAGCTGCAAATTTGCATGAACCACAGCAACATCAACAACAAAGATTGGAAGCATTAAACCACCAGAGGATGGAAGTTATGAATCACTTCTTTCATCACCAAATTCCACATGAGGATTCAGCTATGGAGAAACCCATTTGGGATGTTTGA 1620 0.4364 MSNISGDEGSFSSGNNGEEVQQESEQQQLQSHLHDSSSGPSGACNSNDPNAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQMPDLMSTMPLKASSNTASEFNDHDPKNSLKSPPQELVPIPFRSMSMGGGMFSTNAGALFGGPKNMSPSSSSLQLSSNNSSGFNYLQDSKNGALISGSAQMSATALLQKAAQMGANASNSVNSPMMQKSFVSSMAGPDQVSSTRPPYSGAIMQHNHSSYEHFPQQPDLSNMVGVSGAGAFTNQLFQKGQEEVSQLFNTNNTGSTMNDMGMFSQMSVGSDHHNQGLMKNVEQEVGNFSSLMHGRDVAENNPMEPPRFGGSDMTTVHDFLGIGGSTSRAANLHEPQQHQQQRLEALNHQRMEVMNHFFHHQIPHEDSAMEKPIWDV* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03651 539 Pfam Zinc finger, C2H2 type 67 89 IPR013087 -
Rops8g03651 539 Gene3D Classic Zinc Finger 121 201 - -
Rops8g03651 539 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Rops8g03651 539 MobiDBLite consensus disorder prediction 230 250 - -
Rops8g03651 539 FunFam protein indeterminate-domain 12-like 46 114 - -
Rops8g03651 539 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Rops8g03651 539 Gene3D Classic Zinc Finger 42 113 - -
Rops8g03651 539 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Rops8g03651 539 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 503 IPR031140 -
Rops8g03651 539 SMART c2h2final6 143 163 IPR013087 -
Rops8g03651 539 SMART c2h2final6 108 138 IPR013087 -
Rops8g03651 539 SMART c2h2final6 67 89 IPR013087 -
Rops8g03651 539 MobiDBLite consensus disorder prediction 1 51 - -
Rops8g03651 539 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03651 Rops-Chr8 76752043 76754472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03651 48 333 IDZ Gene Family AT3G50700 54.723 4.23e-105 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g03651 zf-C2H2 0.0055 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03651 - - gmx:100782774 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03651 8 76752043 76754472 Rops8g03651 8 76752043 76754472 ECH