LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g03646	ATGGTGGAGAGGAGGAAGCCTTTGGTACTGTGTTCCACCAAACATGTCATCAATTCCTTATTGGGATCCTCCACTCCCCAAAGCAACAACCATGAATTTCACTTACCCGTTGGGATTCTCCGATTCTCCAATCAATCCCAGTTCCCTTCTATTGACCACTCTTCACTCCTTGGCCTCTCCACTTCTCTTCTCAAAAGGCTTTCTATCAATTCAGGGTCACTGGTTCTGGTCAAGAATGCTGAGATGAACATACAGAGAATTGCAGTGGCCATTGCTCTTGATCCTCCTGGCACCACCACCCCTGATATGCAAACACCCTCTTCTTCTAGAATAATGCTTGTATTTCCTTCTTGTGATTTCCCTCGTAGTGGAACCTTGTTGTTGAATGATGAAGTTGCTTATTTATCTCCTCTTTTGGCCTTTAATCTTAACTTGCACATGATATGTTTAAAATCTATTTTGCACCATGGGGAAGAAGCTTTAGCATCTTATTTCAAACCTCAAGATCAAGGGGGTGATGAGGATGCAATTAAGGATTCTGTCATCAACATAGAATTGGCACCTCTTGCTCAACCTCCAAGATTTGCCTCACTTCTGAGGGTTGCTTTTGTGAAGATACCAGAATGTGGCATCCTTGAATCTATTAGAGCAAGTTCACCTATTGAATCACAAGAACGCCAAGACATGATTGACTTGGCATTGCAAAAGTACTTTGAAGTGGATAGATATTTGTCCAAAGGAGATGTTTTTGGAATTAATATTAGTTGGAACTGCAATTCCACTATTTGCATTCCTTGCAACCAAAAACCACAAACGAAAAATGACAACCTTATATGTTTCAAGGTCATTGGTATGGAGCCATCAGATGAACCAGTTATTCGTGTCAATAGAACCTTAACTGCTCTGGTGCTAGTAGGGAGTTCACCATCTGCCCTTCCTCCAGATTTGTTAATTGCTGGACAGGAAGGGCCTGTGCCTTTGCAAGGGGACATAGTAAAGATCCTGGCTTCAATACTTACACCAACTTTCTGTCCATCAGCGCTTTCATCCAAGTTTAGAGTTTCAGTTCTATTGTATGGATTGGCAGGATGTGGGAAAAGGACTGTCGTTAGATATGTTGCTCGTCGACTGGGCCTGCATGTGGTGGAATATAACTGTCATGATCTAATGGTGTCTGACAGAACATCTGTTGCTCTAGCTCAAGCTTTCAAGACAGCTCGAAGATACTCGCCAGCCATACTTCTTCTTCGTCATTTTGATGTTTTTCGAGATTCACATTCTCCCGAGGGTTCACTAAATGATCAAAGAGGCAATACATCTGAAGTTGCATCAGTTATCAGGAAATTCACTGAGCCAGTTAGTGAACATGACGATAGTAACTCCCTGATGAAATCAAATGGTGAATTTGTAGAGAAGAATGCTGAAAAGACAAGTGGGCATCAGGTCCTGTTGATTGCTGCTGCTGCCAGTTCAGAAGGTCTACCACCAACTATCAGACGCTGCTTTAGCCATGAAATAAGCATGGGGCCTTTGACTGAAGAGCAACGAGCTGAAATGCTATCCCAGTCACTGCAAAGTGTTCCCGAACTCCTCTCTAATGCTGATTCAGAGGGTTTTGTAAAAGAAATAGTTGGACAGACATCTGGTTTCATGCCCAGGGATATGTGTGCTTTAATTGCTGATGCTGGTGCCAACTTATTTCCCAGGAGCAGTGCTGAAGTAGACAAAGATGGACCTGAGGATGTAAATAGTTCCCTTAGTTCCGAGGCGACGGAAGACAACCATCAGCGGAAAGTTTTACCTCAGATTCCTGGGAAAGAAGACTTGATGAATGCTTTGGAACGTTCAAAGAAAAGAAATGCATCAGCTTTGGGCACTCCAAAGGTTCCGAATGTGAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATCCTGGACACTGTTCAGTTACCTCTCCTGCATAAAGATCTGTTTGCATCTGGATTACGCAAGCGCTCTGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAACATTATTAGCAAAAGCTGTTGCTACAGAATGTTCCTTAAATTTTCTTAGTGTAAAAGGTCCTGAACTGATCAACATGTATATTGGAGAGTCTGAGAAGAATGTTAGAGACATTTTCCAGAAGGCCAGATCAGCACGTCCATGTGTCATCTTCTTTGATGAGCTTGATTCTCTTGCTCCAGCTCGGGGTGCTTCTGGAGATTCTGGGGGTGTTATGGACAGGGTGGTTTCTCAGATGCTTGCAGAGATTGACGGCTTAAGTGATTCAACCCAGGATCTATTCATAATAGGTGCTAGTAATAGACCAGATTTGATAGACCCAGCACTTTTGCGCCCTGGTCGATTTGATAAACTGCTATATGTTGGAGTTAACTCTGATCCATCTTACAGGGAGCGGGTCCTTAAAGCTCTCACCAGAAAGTTCAAATTGCATGAAGATGTGTCACTTTACTCTATAGCAAAACAATGTCCACCAAACTTCACTGGTGCAGACATGTATGCCTTGTGTGCAGATGCTTGGTTCCAAGCCGCAAAGCACAAGGTTTTGAGTGCAAATCCAGAGTCTTCCTGCCAAGATAATGAGGCAGATTCTGTTGTTGTTGAATACAATGATTTTGTCCAGGTCTTAGGAGAGCTGCCACCTTCCCTCTCCATGGCTGAGCTTAAGAAATATGAGCAACTGAGAGATCAATTTGAAGGCACCTCTAAATGA	2754	0.431	MVERRKPLVLCSTKHVINSLLGSSTPQSNNHEFHLPVGILRFSNQSQFPSIDHSSLLGLSTSLLKRLSINSGSLVLVKNAEMNIQRIAVAIALDPPGTTTPDMQTPSSSRIMLVFPSCDFPRSGTLLLNDEVAYLSPLLAFNLNLHMICLKSILHHGEEALASYFKPQDQGGDEDAIKDSVINIELAPLAQPPRFASLLRVAFVKIPECGILESIRASSPIESQERQDMIDLALQKYFEVDRYLSKGDVFGINISWNCNSTICIPCNQKPQTKNDNLICFKVIGMEPSDEPVIRVNRTLTALVLVGSSPSALPPDLLIAGQEGPVPLQGDIVKILASILTPTFCPSALSSKFRVSVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCHDLMVSDRTSVALAQAFKTARRYSPAILLLRHFDVFRDSHSPEGSLNDQRGNTSEVASVIRKFTEPVSEHDDSNSLMKSNGEFVEKNAEKTSGHQVLLIAAAASSEGLPPTIRRCFSHEISMGPLTEEQRAEMLSQSLQSVPELLSNADSEGFVKEIVGQTSGFMPRDMCALIADAGANLFPRSSAEVDKDGPEDVNSSLSSEATEDNHQRKVLPQIPGKEDLMNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDPSYRERVLKALTRKFKLHEDVSLYSIAKQCPPNFTGADMYALCADAWFQAAKHKVLSANPESSCQDNEADSVVVEYNDFVQVLGELPPSLSMAELKKYEQLRDQFEGTSK*	918

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g03646	917	Gene3D	-	805	891	-	-
	Rops8g03646	917	Gene3D	-	629	906	IPR027417	-
	Rops8g03646	917	FunFam	Peroxisome biogenesis protein 6	805	891	-	-
	Rops8g03646	917	FunFam	Peroxisomal biogenesis factor 6	629	819	-	-
	Rops8g03646	917	Gene3D	-	327	531	IPR027417	-
	Rops8g03646	917	FunFam	Peroxisome biogenesis protein 6	325	509	-	-
	Rops8g03646	917	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	630	911	IPR027417	-
	Rops8g03646	917	SMART	AAA_5	667	807	IPR003593	GO:0016887
	Rops8g03646	917	SMART	AAA_5	352	512	IPR003593	GO:0016887
	Rops8g03646	917	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	324	577	IPR027417	-
	Rops8g03646	917	MobiDBLite	consensus disorder prediction	569	606	-	-
	Rops8g03646	917	Pfam	ATPase family associated with various cellular activities (AAA)	356	507	IPR003959	GO:0005524\|GO:0016887
	Rops8g03646	917	Pfam	ATPase family associated with various cellular activities (AAA)	671	803	IPR003959	GO:0005524\|GO:0016887
	Rops8g03646	917	CDD	RecA-like_PEX6_r2	643	802	IPR047533	-
	Rops8g03646	917	ProSitePatterns	AAA-protein family signature.	774	792	IPR003960	GO:0005524\|GO:0016887
	Rops8g03646	917	PANTHER	AAA-FAMILY ATPASE	50	914	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g03646	Rops-Chr8	76649137	76655702	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g03646	628	857	Calmodulin-binding Proteins	AT3G56690	50.216	4.05e-62	226

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g03646	K13339		-	gmx:100820183	1502.65