Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03642 ATGGAATTGTACGGTCGAAACCCGACAAGGAATGGGTCAAACCCGGGGAATCAACCCGAATGGCGCTCACCAGGTGGAGATACTAGTCTCGAAGAATCGATGTGGAGCTTGACGCTGGGTAGCAGTGAATCGTATCCGGAGCGACCCGGTGTTCCCAGTTGTGTGTATTACATGAGAACCGGGTTCTGTGGATATGGTGGAAGGTGTCGTTACAATCATCCACGTGATCGTGCTGCGGTTGCTGCAGCTGTAAGAGCTACAGGGGAGTACCCAGAACGAATGGGGGAACCTCCATGTCAGTATTATTTAAAAACTGGAACATGTAAATTTGGTGCATCCTGTAAATTCCACCATCCGAAACATGAAGGTGGATCTTTGAGCCAAGCTCCATTAAATATTTATGGATACCCGTTGCGACCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAATGCAAATTTGGTATAACTTGTAAATTCCATCATCCCCAACCTGCTGGCACATCATTGCCAGCTTCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCAACAGTTCCACTGCCTGACCAGTATGGGGGTGCATCCACGAGCTTGAGAGTGGCTAGGCCTCCCATGCTGCCTGGTTCATATGTACAGGGGGCTTATGGTCCCGTACTTCTTTCCCCAGGGGTTGTTCAATTTCCTGGATGGAATCCTTACTCGGCACCTGTAAGTCCTGTGTTATCTCCTGGTGCTCAACCTGCTGTTGGGGCTACTTCTCTATATGGAGTGACCCAATTGTCTTCATCAACATCAGCTTTTGCTAGGCCATACACTCCTCTGCCCTCTTCTACTGGTCCTTTGGGCAGTAACCCAAAGGGAATAGTGTTTCCTGAAAGACCTGGTGAACCTGAATGCCATTACTATCTAAGAACAGGAGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGGGAAAGGGTGACACAACCACTTCTCAGCCCCATTGGTCTTCCTCTACGTACTTTGTAG 1026 0.4834 MELYGRNPTRNGSNPGNQPEWRSPGGDTSLEESMWSLTLGSSESYPERPGVPSCVYYMRTGFCGYGGRCRYNHPRDRAAVAAAVRATGEYPERMGEPPCQYYLKTGTCKFGASCKFHHPKHEGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPDQYGGASTSLRVARPPMLPGSYVQGAYGPVLLSPGVVQFPGWNPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSTGPLGSNPKGIVFPERPGEPECHYYLRTGDCKFGLACRYHHPRERVTQPLLSPIGLPLRTL* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03642 341 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Rops8g03642 341 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Rops8g03642 341 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Rops8g03642 341 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Rops8g03642 341 MobiDBLite consensus disorder prediction 7 32 - -
Rops8g03642 341 Gene3D - 282 331 - -
Rops8g03642 341 Gene3D - 47 124 - -
Rops8g03642 341 Gene3D - 125 173 - -
Rops8g03642 341 MobiDBLite consensus disorder prediction 1 32 - -
Rops8g03642 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 120 IPR000571 GO:0046872
Rops8g03642 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Rops8g03642 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Rops8g03642 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Rops8g03642 341 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Rops8g03642 341 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Rops8g03642 341 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Rops8g03642 341 PANTHER PROTEIN PHOSPHATASE RELATED 24 339 - -
Rops8g03642 341 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Rops8g03642 341 SUPERFAMILY CCCH zinc finger 96 122 IPR036855 GO:0046872
Rops8g03642 341 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Rops8g03642 341 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Rops8g03642 341 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03642 Rops-Chr8 76619172 76621973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03642 1 339 C2H2 Transcription Factor Family AT5G18550 51.532 2.66e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops8g03642 zf-CCCH 1.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03642 - - lja:Lj5g3v1665190.3 642.884