Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03637 ATGGACGAAGGCTCTGCTGCACCTGCAACTGAAAGGAGAGAGGACTTTGGGAAGTTGCAGCACGGATGCGAACACTATAAGAGACGATGCAAAATTCGAACCCCATGCTGCAATCAGATTTTCCCTTGTCGTCACTGCCACAACGAATCCACTAGCTCAGCTAGCAACCCTAGGGATCGTCATGAACTTGTCAGACGCGATGTTAAGCAGGTTATATGTTCTATTTGTGATACTGAACAAGAGGTTGCTAAGGTGTGTTCTAATTGTGGTGTCAACATGGGGGAATTTTATTGCGAGATTTGCAAATTCTATGATGACAATACTGATAAAGGACAATTTCATTGTGATGAATGTGGGATTTGCAGGGTTGGTGGTCGTGATAATTTCTTTCACTGTAAGAAATGTGGCACATGCTATTCAGTGAGCTTGCAAAATAACCACTTATGTGTAGAGAACTCAATGAAGAGTTCCTGCCCTGTCTGTTTTGAGTACCTATTCGATTCAATAAAAGGCAGCTCAATTTTGAAGTGTGGACACACAATGCACATGGAATGCTATCAAGAGATGGCAACTCAAAATCAGTATCGTTGTCCTATCTGCTTGAAGACAGTATTTGATATGTCTGAGCCCTGGGAACAATTAGATCATGAGATTGAAGCTGTGCGTATGCCTGAGGAGTATAATTTTGAGGTTTCGATTCTGTGCAATGATTGTAACGCTACTAGCACGGTTTCCTTTCACATATTGGGTCACAAGTGCAGACACTGCGGTTCGTATAACACCCGTAGGATTTCGACAACAGCCGAAGATCAGTGA 816 0.4277 MDEGSAAPATERREDFGKLQHGCEHYKRRCKIRTPCCNQIFPCRHCHNESTSSASNPRDRHELVRRDVKQVICSICDTEQEVAKVCSNCGVNMGEFYCEICKFYDDNTDKGQFHCDECGICRVGGRDNFFHCKKCGTCYSVSLQNNHLCVENSMKSSCPVCFEYLFDSIKGSSILKCGHTMHMECYQEMATQNQYRCPICLKTVFDMSEPWEQLDHEIEAVRMPEEYNFEVSILCNDCNATSTVSFHILGHKCRHCGSYNTRRISTTAEDQ* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03637 271 CDD RING-H2_Pirh2-like 158 200 - -
Rops8g03637 271 Gene3D - 229 271 - -
Rops8g03637 271 SMART ring_2 158 200 IPR001841 -
Rops8g03637 271 Pfam CHY zinc finger 23 103 IPR008913 GO:0008270
Rops8g03637 271 SUPERFAMILY Zinc hairpin stack 94 151 IPR037275 -
Rops8g03637 271 Pfam Ring finger domain 157 200 IPR001841 -
Rops8g03637 271 SUPERFAMILY CHY zinc finger-like 19 92 IPR037274 GO:0008270
Rops8g03637 271 FunFam RING finger and CHY zinc finger domain-containing protein 1 228 271 - -
Rops8g03637 271 ProSiteProfiles Zinc finger CTCHY-type profile. 93 157 IPR017921 -
Rops8g03637 271 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 11 268 - -
Rops8g03637 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 228 IPR013083 -
Rops8g03637 271 Pfam Zinc-ribbon 205 262 IPR039512 -
Rops8g03637 271 SUPERFAMILY RING/U-box 157 205 - -
Rops8g03637 271 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Rops8g03637 271 ProSiteProfiles Zinc finger CHY-type profile. 16 91 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03637 Rops-Chr8 76517244 76520427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03637 15 266 C2H2 Transcription Factor Family AT3G18290 42.857 6.13e-56 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03637 K10144 - gmx:100818374 495.352