Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03636 ATGAGTGGTTCTCCAAGACAACCACACACTTCATATAAAGAAGAAGAAGCACCACAACCAGTGAGGCCATGTGACTATTGTGGAAACTCCACTGCAGTTCTCCACTGCAGAGCTGACTCAGCAAAACTCTGTTTCTCTTGTGATCGTGAAGTTCACTCCACAAACCAACTTTTCTCTAAGCATACTCGCACTCTTATTTGTGATGCCTGTGATGATTCCCCTGCTACCATACTCTGTTCCACTGAATCCTCTGTTCTGTGTCAGAACTGTGACTGGGAAAAACACAATCTTTCGATGTCTCCAGTGCATGAAAGGAGGCCTATTGAGGGGTTCACTGGGTGCCCTTCTGTTACTGAACTCTTGTCCATTATGGGGTTCCAAGATATTGGGAAAAAATCTCTGCTTTCTACTCAGGAAAGTGGGGTTGTTGCAGGGGATGGATTTTTGGGGTGTGAGATTGAAGGGTTTTCTGATTTGTTTGTCTGGGATGCTCCTCCTGTTTTTAGTCTTGATGATTTGATCTCTTCCTCTGCTTCTTCTCGTAACTTTCAGGCTATGGAGGTTCCTCCTTTGCCTAAGAATCGCAAGGCTGCTTGTGGGAGACACAAAGAAGAGATTCTTAGTCAGCTTCGTGAGCTAACAAAGTCTGAGCCCTTGGACACTGAACAGTATGTGTCATCCGGAAATCTGTCCACTGGTTTTGAACGTGACATGGAGGCTGATATCTTTCCTTCTCATGAGTGGCACAGAGAAAGTAGTGAGCCTATGTATCAAGTTGTTCCTCCCCATACGACATTGAGAGCTTATACTGAAGAAATTCCACTTAAACATTCTACTTCTGCTGTTGGGGAGACTCATAGCTATCCAAATGATGCAGGGACACCGTCAAATTCTCTTAGGTCTGAAACCTTATCAACTACTCCTAAAGTTGTGCCATATGAATTAGCAAGTCAAGAAAGGGATTCTGCATTATTACGCTACAAGCAGAAGAAGAAAACAAGAAGATATGAGAAGCACGTAAGGTATGAATCACGAAAAGTTCGGGCAGAAAGCAGGATAAGAGTTAAGGGCCGATTTGCCAAGATGGAACACTGA 1095 0.4393 MSGSPRQPHTSYKEEEAPQPVRPCDYCGNSTAVLHCRADSAKLCFSCDREVHSTNQLFSKHTRTLICDACDDSPATILCSTESSVLCQNCDWEKHNLSMSPVHERRPIEGFTGCPSVTELLSIMGFQDIGKKSLLSTQESGVVAGDGFLGCEIEGFSDLFVWDAPPVFSLDDLISSSASSRNFQAMEVPPLPKNRKAACGRHKEEILSQLRELTKSEPLDTEQYVSSGNLSTGFERDMEADIFPSHEWHRESSEPMYQVVPPHTTLRAYTEEIPLKHSTSAVGETHSYPNDAGTPSNSLRSETLSTTPKVVPYELASQERDSALLRYKQKKKTRRYEKHVRYESRKVRAESRIRVKGRFAKMEH* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03636 364 ProSiteProfiles Zinc finger B-box type profile. 19 66 IPR000315 GO:0008270
Rops8g03636 364 MobiDBLite consensus disorder prediction 280 306 - -
Rops8g03636 364 MobiDBLite consensus disorder prediction 1 20 - -
Rops8g03636 364 Pfam CCT motif 320 362 IPR010402 GO:0005515
Rops8g03636 364 SMART bboxneu5 19 66 IPR000315 GO:0008270
Rops8g03636 364 SMART bboxneu5 67 108 IPR000315 GO:0008270
Rops8g03636 364 CDD Bbox1_BBX-like 23 66 - -
Rops8g03636 364 MobiDBLite consensus disorder prediction 279 306 - -
Rops8g03636 364 Pfam B-box zinc finger 66 108 IPR000315 GO:0008270
Rops8g03636 364 ProSiteProfiles Zinc finger B-box type profile. 62 108 IPR000315 GO:0008270
Rops8g03636 364 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 23 362 - -
Rops8g03636 364 ProSiteProfiles CCT domain profile. 320 362 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03636 Rops-Chr8 76504846 76508653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03636 15 335 C2C2-CO-like Transcription Factor Family AT2G47890 40.179 1.36e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Rops8g03636 zf-B_box 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03636 - - gmx:100817838 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03636 8 76504846 76508653 Rops8g03636 8 76504846 76508653 ECH