Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03627 ATGCGATGCGATGCAACGCAACGCAAGAGGCATGACATGAGGCAGGCGAAAGCATGCAGTTCTCTCTCTTTCCATATATGCTTGCTCCTCCGCTTTCATTTCCATTCAATGAGGAGGAAGAGAGAGATGGATGGTGCAGATAGAGAGAGGCTTCGCCGTGCGCCTGGTTCATCCTCTGGTGTGAAAGATGATTTGTATGCTGAACTGTGGCATGCATGTGCTGGGCCTGTCTATGTTCCTCGCGCTGGAGAGAAGGTGTTCTACTTCCCTCAGGGTCACTTGGAGCAGGTTGCTGCCTTTACTCAACATCAGCAAGATGGTCACATGGAAATTCCTGTATATGATTTGCCTTCTAAGATCTTATGCACGGTTATGTGCGTTCAGTTAAAGGCTGAAGCTTACACAGATGAGGTTTATGCTCAAGTTACATTAGTTCCAGAGCCCAAGCAAGATGAATTTAGTCCAGAGGACAACGAAACTTGTCAGATACCTCACAGAAGTAAAACATACTCTTTTAGCAAGATACTCACTCCATCAGACACAAGTACACACGGTGGATTCTCTGTTCCCAAGCGACATGCAGATGAATGCTTCCGCCCTCTGGATATGACTCATCAACAACCAATACAAGAGCTGGTTGCTAAGGACTTGCATGGGTTTGAGTGGCATTTTCGGCATATATATCGCGGACAACCGAAACGGCACTTACTTACTAGTGGTTGGAGCACGTTTGTTAATTCAAAAAAACTTCATGCTGGAGATGCATGCATTTTCGTCAGTGGGAAGAATGGAGAACTTCGTATTGGGATTCGTCGAGCAATGAAACAACACAGCAATGCATCCACATCTTCATCTCTGATATCGGGTCATAGCATGCAAATTGGAATATTGGCTACTGCGTCCCATGCTGTTGCTACAGGATCCATGTTCACTGTCTATTACCGCCCTTGGACGAATCCCTTTGAATTTATTATTCCTCTGAAAAACTACATGAAGTCAACTGAAACGGACTATTCAATTGGAACGAGAGTACAAATGCTGTTTGAAGTTGAAGAATCTGAAAGATATGCAGGTTCGATAATTGGTATTGAAGATATCGATAACATTAGGTGGCCTGGTTCAGAATGGAGATGTCTCAAGGTGCAATGGGATGCCGTACTAGATACGTATATGCATCCAGAAAGGGTTTGTCCTTGGTGGATTGAGCCCTTGGAATCTGTCAACAACAAGAAGGGCATTCATATTCTCCCCCTACTTAACGAGGCACGTGTACTTAACCCGCCATTTCCTGGCTTAAGCGGCTTTGCCAGGGACGAGATAGTTCAGAATTCAGCCAGGCCTGCATCTCAGAGAGTGGATAGGGAATTACAAGGTCAAGATTACAATGGCATATGTTCTCCGCAACCTTTGCAAAAGCCAACATCAACAGATGTCCTCCTCCCATTGAAGGGCACCACTATCTGTGACTCGCAGTTTAGGATGGAGAAGCCGAATCAGCTTCCCTCTCTTATGCATGACCCTTTTCACCAATCTCTTGGCAGCTCAATGTCATTTCCTCACGAAGTCATATCAACTTCAAATTCAAATGTGAACTCCACTTGTTCGGAATCTCATGGATGGCCTCCTTCTGAATCTAAAGATGAAAATGATGTTCCTTTTGGCCAACCTGGCAGTTGTAGTAGATACAAGCTTTTCGGGGTTAGCTTAATTGATAGCAAACCGGAGCTCCCTTCACCACAATTTTCTACTTTTAGCAAAATTTCCAGTCCTCCAATATGTGTTACCTCTGAGAAAACATGCAAGAAGTGTCGATTGGTTAATAGCAGGAGTTGCACTAAGGTGCTTAAGCTAGGAACTGCACTTGGAAGAGCGATTGACCTCGCACGTTTTCCTGGATATGATGAACTCATTTCTGAACTTGACCGGATGTTTGATTTTGGAGGAAGCTTAATCAATGGAAGCAGTGGATGGCATGTGACCTGCATAGATGATGATGGAGATATAATGCTATTAGGGGATTACCCTTGGCAGGATTTCCAGTCCATGGTGCAAAAGATGATCATATGTCCAAAGGATGGTATTAACAATCCCAATCCAAGCTCCTCAGCAGATCCTACCCTCCTTTTGTCTTTGCCTTATCTCTCGTGCTCCACCCTTGACTAG 2163 0.4461 MRCDATQRKRHDMRQAKACSSLSFHICLLLRFHFHSMRRKREMDGADRERLRRAPGSSSGVKDDLYAELWHACAGPVYVPRAGEKVFYFPQGHLEQVAAFTQHQQDGHMEIPVYDLPSKILCTVMCVQLKAEAYTDEVYAQVTLVPEPKQDEFSPEDNETCQIPHRSKTYSFSKILTPSDTSTHGGFSVPKRHADECFRPLDMTHQQPIQELVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVNSKKLHAGDACIFVSGKNGELRIGIRRAMKQHSNASTSSSLISGHSMQIGILATASHAVATGSMFTVYYRPWTNPFEFIIPLKNYMKSTETDYSIGTRVQMLFEVEESERYAGSIIGIEDIDNIRWPGSEWRCLKVQWDAVLDTYMHPERVCPWWIEPLESVNNKKGIHILPLLNEARVLNPPFPGLSGFARDEIVQNSARPASQRVDRELQGQDYNGICSPQPLQKPTSTDVLLPLKGTTICDSQFRMEKPNQLPSLMHDPFHQSLGSSMSFPHEVISTSNSNVNSTCSESHGWPPSESKDENDVPFGQPGSCSRYKLFGVSLIDSKPELPSPQFSTFSKISSPPICVTSEKTCKKCRLVNSRSCTKVLKLGTALGRAIDLARFPGYDELISELDRMFDFGGSLINGSSGWHVTCIDDDGDIMLLGDYPWQDFQSMVQKMIICPKDGINNPNPSSSADPTLLLSLPYLSCSTLD* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03627 720 ProSiteProfiles PB1 domain profile. 609 692 IPR000270 GO:0005515
Rops8g03627 720 SMART B3_2 172 274 IPR003340 GO:0003677
Rops8g03627 720 Gene3D - 337 410 - -
Rops8g03627 720 Gene3D - 170 274 IPR015300 -
Rops8g03627 720 SUPERFAMILY DNA-binding pseudobarrel domain 163 303 IPR015300 -
Rops8g03627 720 Gene3D - 605 696 - -
Rops8g03627 720 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 63 692 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops8g03627 720 FunFam Auxin response factor 337 408 - -
Rops8g03627 720 ProSiteProfiles B3 DNA-binding domain profile. 172 274 IPR003340 GO:0003677
Rops8g03627 720 FunFam Auxin response factor 170 274 - -
Rops8g03627 720 Pfam AUX/IAA family 650 688 IPR033389 -
Rops8g03627 720 SUPERFAMILY CAD & PB1 domains 617 685 - -
Rops8g03627 720 Pfam Auxin response factor 300 380 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops8g03627 720 CDD B3_DNA 171 272 IPR003340 GO:0003677
Rops8g03627 720 Pfam B3 DNA binding domain 172 273 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03627 Rops-Chr8 76353957 76364048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03627 602 701 B3 DNA Binding Superfamily AT5G62000 45.000 1.14e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops8g03627 B3 2.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03627 - - lja:Lj1g3v4764520.2 1035.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03627 8 76353957 76364048 Rops8g03627 8 76353957 76364048 ECH