Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03610 ATGGGCGCCAATTCATTATCCGAGTCGACTCACGATCTCGATGAGCAGATCTCACAGCTCATGCAGTGCAAGCCACTCTCCGAGCAACAGGTTAGAGATTTATGTGAGAAGGCTAAGGAGATTTTAATGGATGAAAGTAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGTGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTTCGAATTGGCGGGAAGTGTCCAGATACAAACTACTTGTTTATGGGTGATTATGTGGACCGTGGTTATTATTCAGTTGAGACTGTAACACTCCTCGTGGCTCTGAAAGTGCGGTATCCTCAGCGTATTACCATTCTTAGAGGAAACCATGAAAGCCGTCAGATTACTCAGGTATATGGATTTTACGATGAATGCCTAAGAAAGTATGGTAGTGCTAGTGTTTGGAAGATCTTTACAGACCTTTTCGATTTTTTTCCATTGACTGCATTGGTTGAATCAGAAATATTCTGTTTGCATGGTGGACTGTCGCCGTCAATTGAGACCCTTGATAACATAAGGAACTTTGATCGTGTTCAAGAGGTTCCCCATGAGGGGCCCATGTGTGATCTATTGTGGTCTGACCCAGATGACAGATGTGGCTGGGGGATCTCTCCTCGTGGTGCTGGATATACTTTTGGCCAGGATATATCTGAACAATTCAATCACACGAACAGCCTTAAATTGATTGCTCGAGCTCATCAGCTGGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGTTACCGCTGTGGGAACATGGCTTCCATATTGGAGGTTGATGATTGCAAGGGACACACATTCATCCAGTTTGAACCTGCTCCGAGGAGAGGAGAACCTGATGTCACCCGCAGAACACCTGATTACTTCCTGTAA 939 0.443 MGANSLSESTHDLDEQISQLMQCKPLSEQQVRDLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSASVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03610 312 Pfam Calcineurin-like phosphoesterase 54 245 IPR004843 GO:0016787
Rops8g03610 312 SUPERFAMILY Metallo-dependent phosphatases 8 297 IPR029052 -
Rops8g03610 312 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 11 312 IPR047129 GO:0004722
Rops8g03610 312 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Rops8g03610 312 CDD MPP_PP2A_PP4_PP6 12 296 - -
Rops8g03610 312 SMART pp2a_7 26 296 IPR006186 GO:0016787
Rops8g03610 312 Gene3D - 5 312 IPR029052 -
Rops8g03610 312 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Rops8g03610 312 PRINTS Serine/threonine phosphatase family signature 151 177 IPR006186 GO:0016787
Rops8g03610 312 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Rops8g03610 312 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Rops8g03610 312 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Rops8g03610 312 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Rops8g03610 312 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Rops8g03610 312 FunFam Serine/threonine-protein phosphatase 5 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03610 Rops-Chr8 76188689 76195017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03610 34 242 Calmodulin-binding Proteins AT5G63870 34.661 2.63e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03610 K04382 - gmx:100775812 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03610 8 76188689 76195017 Rops8g03610 8 76188689 76195017 ECH