Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03605 ATGGCTTCGAGATTCTGGACACAGGGCGGTAGTGATTCTGAGGAGGATGAGGGTGATTTTGATGAGGAGGTTGAAGCCACGGTGGGTGATTCCCCTCGTCAAGATGTTACAAGCAGGTACCTGCGGGGCAATGACAGTGACAGTGATGACTCTGATGGGCAAAAGCGTGTTGTTAGGTCGGCAAAAGATAAGCGTTTTGAGGAGATGGCTTCAACTGTTGATCAGATGAAGAATGCCATGAAGATCAATGACTGGGTGAGCTTGCAAGAGAGTTTTGACAAGATTAACAAACAGCTTGAGAAGGTCATGCGTGTGACTGAGTCCGAGAGGGTCCCCAATCTTTATATCAAGGCACTTGTGATGTTGGAAGATTTCTTGACTCAGGCTTTGGCTAATAAAGATGCCAAAAAGAAGATGAGTAGTAGCAATGCCAAGGCCTTGAACTCGATGAAGCAGAAGTTGAAGAAGAATAATAAGCAATATGAGAACTTGATTAATAAATGCAGGGAGAATCCGGAGAGTGAGGAGGAAAAGGATGAGGAGGAGTCGGAGGAAGAATATGAAAGTGATGTTGAGATGATTGAGCCGCCAGAGTTGAAATCAGATTTGGAGGCCTCTCTATCTGAAGATGATAAGGCAGATGCCAGCGAAGGACCTTGGGACCAAAAGCTTAGCAAGAAAGATAGGCTTTTGGATAGACAATTCATGAAAGACCCTAGTGAGATCACTTGGGACACTGTTAACAAGAAGTTCAAGGAGGTCGTGGCAGCTAGGGGAAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCTTAACAAAAGTCGCTAAAACGCCAGCACAGAAGCTGGAAATTCTTTTTAGTTTGGTTTCTGCCCAGTTTGATGTCAATCCAGGCCTCAGTGGGCACATGCCCATAAATGTGTGGAAAAAATGTGTACAGAATATGCTGGTCATTCTTGATATTCTGGTGCAGTACCCTAACATAAAGGTTGATGATTCAGTGGAGCCAGATGAAAACGAAACTCAGAAAGGGCCTGACTATAATGGACAAATTCGAGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAGAATAGATTCTGAGTTTTTCAAGAGCCTGCAGTGTATAGATCCTCATACACGGGAGTATGTTGAGAGACTCAGGGATGAGCCCATCTTTTTGGTTCTTGCTCAAAATGTTCAGGAATATCTTGAAAGGACTGAAGATTTCAAAGCTGCTTCTAAGGTGGCCCTAAGGAGGGTTGAACTCGTTTACTACAAACCACAAGAGGTTTATGATGCCATGAGGAAATTGGCTGAGCTGACAGAAGATGGAGATAATGGAGGGGAGGCAAGTGAGGAGTCGAAAGGGTTAGAGGAAACAAGGGTTCCTACTGCATTTGTTGTTACTCCAGAGCTTGTGGCCCGGAAACCTACCTTCCCTGAGAACAGCAGGACCCTAATGGACTTATTAGTAGCTTTGATATACAAATATGGAGATGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCGTGATGAGTTCTCAATAGCCCGTGATCTGCTCCTTATGAGTCATTTGCAAGATAGTGTTCAGCATATGGACATTTCAACACAGATACTTTTTAACAGGGCTATGTCGCAGTTAGGTCTATGTGCTTTTCGAGTTGGACTGATATCTGAAGCACATGGTTGTCTGTCAGAACTTTATTCTGGTGGAAGGGTAAAAGAGTTGCTTGCACAAGGCGTGTCACAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGTCAGATGCCTTATCATATGCACATAAATCTTGAGCTCCTGGAGGCAGTGCATCTTATATCTGCTATGCTGCTGGAAGTTCCCAATATGGCAGCCAACGTTCATGATGCGAGGCGCAAGGTCATTAGCAAGAATTTTCGTCGGTTGCTTGAGGTCAGTGACAAACAAACTTTCACTGGTCCACCGGAAAATGTCAGGGATCACATTATGGCTGCCACAAGGGCTCTTAGTAAAGGAGACTTCCAAAAGGCCTTTGACATTATTGTGTCTCTTGATGGATGGAAATTTGTGAGAAACCGAGACACTGTGCTTGAAATGCTGAAGGACAAAATCAAGGAGGAGGCACTGAGGACATACCTCTTTACCTTCTCTTCATCTTATGATTCTCTGAGTCTGGATCAGCTCACAAAAATTTTTGACCTCTCCGAGCCTCGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACAGGCTGCATTGTTTTCCAAAATGTTGAGCACTCTAGACTGCAGGCGTTGGCATTCCAGTTGACAGAGAAATTATCTATTCTTGCAGAGAGTAATGAAAGAGCTACAGAGGCAAGGATAGGTGGTGGCGGCTTGGATCTGCCTCTAAGGAGGAGAGACGGCCAGGACTATGCTGCCGCCGCCGCCGGTGGTGGTAGTGGAACGACCTCCTTGGGTGGTAGGTGGCAAGACTTGTCTCTTTCTCATCCAAGGCAAGGCAGTGGACGTGCTGGATACGGTGGTGGAAGGCCATTGGCATTAGGTCAAGCAGCTGGGAGTGGATATTCAAGGGGACGAGGAACTGGTGGTGGCTATCAGAGCTCACGGTATCAAGATGCTGCATATTCAGGGAGGGCTGCTCAAGCATTGAGGGGACCCCAGGGCGATGGATCTAGTCGCATGGTTAGCCTTAAGGGAGTTCGTGCTTAA 2796 0.4589 MASRFWTQGGSDSEEDEGDFDEEVEATVGDSPRQDVTSRYLRGNDSDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESERVPNLYIKALVMLEDFLTQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYENLINKCRENPESEEEKDEEESEEEYESDVEMIEPPELKSDLEASLSEDDKADASEGPWDQKLSKKDRLLDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSLVSAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQYPNIKVDDSVEPDENETQKGPDYNGQIRVWGNLVAFLERIDSEFFKSLQCIDPHTREYVERLRDEPIFLVLAQNVQEYLERTEDFKAASKVALRRVELVYYKPQEVYDAMRKLAELTEDGDNGGEASEESKGLEETRVPTAFVVTPELVARKPTFPENSRTLMDLLVALIYKYGDERTKARAMLCDIYHHALRDEFSIARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAANVHDARRKVISKNFRRLLEVSDKQTFTGPPENVRDHIMAATRALSKGDFQKAFDIIVSLDGWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSSYDSLSLDQLTKIFDLSEPRTHSIVSRMMINEELHASWDQPTGCIVFQNVEHSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYAAAAAGGGSGTTSLGGRWQDLSLSHPRQGSGRAGYGGGRPLALGQAAGSGYSRGRGTGGGYQSSRYQDAAYSGRAAQALRGPQGDGSSRMVSLKGVRA* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03605 931 MobiDBLite consensus disorder prediction 40 63 - -
Rops8g03605 931 MobiDBLite consensus disorder prediction 175 192 - -
Rops8g03605 931 MobiDBLite consensus disorder prediction 835 872 - -
Rops8g03605 931 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 867 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Rops8g03605 931 Coils Coil 144 171 - -
Rops8g03605 931 MobiDBLite consensus disorder prediction 845 859 - -
Rops8g03605 931 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 45 647 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Rops8g03605 931 ProSiteProfiles PCI domain profile. 615 787 IPR000717 -
Rops8g03605 931 MobiDBLite consensus disorder prediction 1 63 - -
Rops8g03605 931 MobiDBLite consensus disorder prediction 134 154 - -
Rops8g03605 931 Gene3D - 722 791 IPR036388 -
Rops8g03605 931 Pfam PCI domain 655 783 IPR000717 -
Rops8g03605 931 SUPERFAMILY "Winged helix" DNA-binding domain 711 786 IPR036390 -
Rops8g03605 931 MobiDBLite consensus disorder prediction 879 898 - -
Rops8g03605 931 MobiDBLite consensus disorder prediction 155 174 - -
Rops8g03605 931 MobiDBLite consensus disorder prediction 904 931 - -
Rops8g03605 931 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 926 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Rops8g03605 931 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 716 804 IPR000717 -
Rops8g03605 931 MobiDBLite consensus disorder prediction 133 197 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03605 1 931 Eukaryotic Initiation Factors Gene Family AT3G56150 68.611 0.0 1211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03605 K03252 - gmx:100781967 1477.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03605 8 76140977 76145488 Rops11g03567 11 68090456 68096102 ECH
Rops8g03605 8 76140977 76145488 Rops8g03605 8 76140977 76145488 ECH