Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03602 ATGAGACATGGAATTTGTGGTGGATGTGATGATCCTGTTGAGTTTGTTCCTGATTTGGGTTGCATAGCTTTAGCTGAATTTGAAATTCAAGACTTGTCTATTTTGGGGATGGAGTCTCAGGTGAAGCATGCTGTGGTTATTAAAGTTATGGGTCGTACTGGATCTAGAGGACAGGTGACCCAGGTTAGAGTGAAGTTCTTGGATGATCAGAACCGTTACATCATGAGGAACGTGAAAGGACCAGTTAGAGAAGGAGACATCCTCACCCTACTCGAGTCTGAAAGGGAAGCAAGAAGGTTGCGCTAG 306 0.4444 MRHGICGGCDDPVEFVPDLGCIALAEFEIQDLSILGMESQVKHAVVIKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03602 101 SUPERFAMILY Nucleic acid-binding proteins 37 101 IPR012340 -
Rops8g03602 101 Pfam Ribosomal protein S28e 40 100 IPR000289 GO:0003735|GO:0005840|GO:0006412
Rops8g03602 101 Hamap 30S ribosomal protein S28e [rps28e]. 37 101 IPR000289 GO:0003735|GO:0005840|GO:0006412
Rops8g03602 101 Gene3D - 36 101 IPR012340 -
Rops8g03602 101 PANTHER 40S RIBOSOMAL PROTEIN S28 37 101 IPR000289 GO:0003735|GO:0005840|GO:0006412
Rops8g03602 101 FunFam 40S ribosomal protein S28 36 101 - -
Rops8g03602 101 ProSitePatterns Ribosomal protein S28e signature. 92 100 IPR028626 -
Rops8g03602 101 CDD S1_S28E 42 101 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03602 Rops-Chr8 76116243 76117457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03602 37 101 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 89.231 7.16e-36 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03602 K02979 - csv:101212501 102.834