Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03583 ATGCCGAGCTTCAGAATGAGGAACTTGTTGTCCCGTGTCAGGAGAAAGACAAAGAAAAACATCAGAAACAGAAAGCTCAGAAACCAAAACTGCATTTCCATCTCAAAACAAATGCCATGTCATGTAGAAGAAGAAGAAGAAGAAGATACTGAGGAAGGTTTCAACATCAAAAGCTATGCCCCATCACACACCCATGGCGTTCAACCCTTGGGCAATCTTTATCTCAATCCAGGTTCCATCAACTCCAGAGACACTGGTTTAGGTAATCTTCATACCCTCACGGATGAGCTTGTTCTTGATATTCTTGGGTTTTTGGATGGTACCAGCTTGGGGGTTTTGGCCTCTGTGAGCAAGTCCTTTTATGTTTTTACTAACCATGAACCCCTTTGGAGGAATCTTGTGTTGGAGAATCTTCTTGGTGGGTTTAGGTCCAATGGGTCTTGGAAATCTACTTATATTGCTGCTTTTTACCCTTCATTTGATATCTCCACCATTGGTCTTAAGAGTTTCAAAGTTAGAGACTTTTATTCTGATTATCTTTTCCAGAGTTGGCTCTGTGCTAATCTTGAAATGAAGCCTGAATGGTTGGAGAGGGATAATATAGTTAGAAAGAAAGGGATTTCAGTTGAAGAATTTGTGTTGAATTTTGAGGAGCCTAATAAGCCAGTTTTGTTGGAAGGGTGTATTGATAATTGGGATGCATTGAGAAATTGGGATAGAAATTATTTGGTGCAGTTGTGTGGTGATATTAAGTTTTCAGTTGGGCCAGTGGAGATGAAGCTTGGAGAATATTTTGGGTACTCAGATCAAGTTAGAGAAGAAAGACCATTGTATCTGTTTGATCCAAAATTTGCTGAAAAAGTTCCAAAATTGGGTTCTGAATATCAAGTTCCAGTGTACTTTCAGGAGGACTTGTTTGGTGTTTTGGGCAATGAGAGACCTGACTACAGGTGGATTATTATTGGACCAGCTGGATCTGGATCATCGTTCCATGTCGATCCAAATTCTACTTCTGCTTGGAATGCAGTGATCAAGGGGTCCAAGAAATGGGTATTATTTCCCCCTGATGTAATTCCACCTGGCGTTCATCCAAGTCCTGATGGTGCAGAGGTGGCATCTCCTGTTTCGATAATTGAATGGTTCATGAACTTCTATGGTGCAACAAAAAATTGGAAAAAGAAACCAATTGAGTGCATATGTAAAGCTGGGGAGGTTATCTTTGTGCCTAATGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCTATAGCCATAACCCAAAACTATGTTAGTAGGAGAAATTTGTTAAATGTCTTGGATTTTCTTAAAAGGCCGAATGCCTGTACATTGGTATCCGGCACAAGGGATCGAGTGAATTTGTATGATAAATTCAAGAATGTCATTGAGGCTTCTTTTCCTAGAGTAATTGATGAACTGACCCAAAAACAAGAAGAGAAAATGTTCCAGCAAAAGAAACCTTTCTGGGATTCTGTTACAGATGCCAACGTGGGAGCTTTCAAGTTCTCTTTTTAG 1533 0.4018 MPSFRMRNLLSRVRRKTKKNIRNRKLRNQNCISISKQMPCHVEEEEEEDTEEGFNIKSYAPSHTHGVQPLGNLYLNPGSINSRDTGLGNLHTLTDELVLDILGFLDGTSLGVLASVSKSFYVFTNHEPLWRNLVLENLLGGFRSNGSWKSTYIAAFYPSFDISTIGLKSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKKGISVEEFVLNFEEPNKPVLLEGCIDNWDALRNWDRNYLVQLCGDIKFSVGPVEMKLGEYFGYSDQVREERPLYLFDPKFAEKVPKLGSEYQVPVYFQEDLFGVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWVLFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWKKKPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNACTLVSGTRDRVNLYDKFKNVIEASFPRVIDELTQKQEEKMFQQKKPFWDSVTDANVGAFKFSF* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03583 510 Gene3D - 83 158 - -
Rops8g03583 510 ProSiteProfiles JmjC domain profile. 286 446 IPR003347 -
Rops8g03583 510 SMART cupin_9 277 446 IPR003347 -
Rops8g03583 510 FunFam F-box protein At1g78280 181 431 - -
Rops8g03583 510 SUPERFAMILY Clavaminate synthase-like 203 444 - -
Rops8g03583 510 Gene3D Cupin 177 431 - -
Rops8g03583 510 ProSiteProfiles F-box domain profile. 87 133 IPR001810 GO:0005515
Rops8g03583 510 Pfam F-box-like 95 135 IPR001810 GO:0005515
Rops8g03583 510 SMART fbox_2 93 133 IPR001810 GO:0005515
Rops8g03583 510 SUPERFAMILY F-box domain 85 154 IPR036047 GO:0005515
Rops8g03583 510 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 87 508 - -
Rops8g03583 510 Pfam Cupin-like domain 211 429 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03583 Rops-Chr8 75945961 75948936 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03583 78 435 Glycosyltransferase AT1G78280 37.669 8.67e-75 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Rops8g03583 Cupin_8 7.2e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03583 - - lja:Lj1g3v4753250.1 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03583 8 75945961 75948936 Rops8g03583 8 75945961 75948936 ECH