Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03578 ATGGAGGTTCCAGAGATGGAAAGCAAGACTGAAAGTCATATGACATCAGCTGCGGCCTTTGTTGAAGGGGGCATTCAAGAATCCTGTGATGATGCTTGCAGCATATGTCTTGAGGAGTTTTGTGAAAGTGATCCTTCAACGATCACTACTTGCAGGCATGAGTTTCACCTGCAGTGCATTCTTGAGTGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAAACTATTAGCTTGAAGGATCCCACCAGTCAAGAATTGTTTGAGGCGGTCGAGCAGGAGAGGAGCTTGAGGGTTACTCCATCAAGAAATGCTGCTATTTTTCATCACCCTGCTCTTCGTGATTTTGAATTGCAGCGTTTACGCATGGGTATCAATGATGCTGATTTTGAAGAGCGAATAATTCAACATTTAGCTGCTGCTGCAGCAATGGGAAGAGCACACCACCTTGTTCGGAGGGAAGGGCAGCGAACTCGGTCATCTGCTCATGGTCATCCACATTTCTTAGTATTCTCAACTCAGCCTATTGCACCCTCGCTAGGTCCTGATTCAGCTGCTGGAGGGGGAAATGAACCAGCTGCAATTCCTTTAGGAAGTCCATCTACCCCCATAACATCTGATGGAGATGAACCATCACAACAGATCTCGCATCTTCATTCCCAAAGCTCTTCTTCATCTTCTGGATCTACTGTCATGGCAACAAATCGCCAAGGAATTTACTCTAATGATAGAGGCTCTACTGCTCATTCTTCACCAGCAAACCAAGATAGAGCAGGGCCATCAGAATTCCAGTCATTTTCTGATTCTCTGCGGTCCAGACTTAATGCAGTATCCATGAAGTATAAAGAGTCAATTTCAAAGGGTGCAAGGGGATGGAAGGAGAGGCTGTTCTCTCGAAGTTCTTCCATGCCAGAACATAGTTTGGAAGCTAGGAGAGAGGTGAATGCTGGAATATCCAGTGTAACCCGATTGATGGAATCCCTTGAAACTAGAGAAGATAATAGAGCTGTGGGTTCTTCTTTGTCAAATCATTTGGAGGATGGTTCCATGGCAGAGCTGCTTGTTCTGCTGGCTCACATTCAAACTGAGCTCTTTTTTGTTTCAGTTAATGCATCTTTCCTCAGCATATCATATTTGAAGGTCAACTGTTTCTCCAGACATGATATGCTGAGGAGCAGATGCTTTGGAAATAGTCATGGCTGGCTGTTATGA 1212 0.4513 MEVPEMESKTESHMTSAAAFVEGGIQESCDDACSICLEEFCESDPSTITTCRHEFHLQCILEWCQRSSQCPMCWQTISLKDPTSQELFEAVEQERSLRVTPSRNAAIFHHPALRDFELQRLRMGINDADFEERIIQHLAAAAAMGRAHHLVRREGQRTRSSAHGHPHFLVFSTQPIAPSLGPDSAAGGGNEPAAIPLGSPSTPITSDGDEPSQQISHLHSQSSSSSSGSTVMATNRQGIYSNDRGSTAHSSPANQDRAGPSEFQSFSDSLRSRLNAVSMKYKESISKGARGWKERLFSRSSSMPEHSLEARREVNAGISSVTRLMESLETREDNRAVGSSLSNHLEDGSMAELLVLLAHIQTELFFVSVNASFLSISYLKVNCFSRHDMLRSRCFGNSHGWLL* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03578 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 82 IPR013083 -
Rops8g03578 403 SUPERFAMILY RING/U-box 26 81 - -
Rops8g03578 403 MobiDBLite consensus disorder prediction 173 266 - -
Rops8g03578 403 Pfam Ring finger domain 32 73 IPR001841 -
Rops8g03578 403 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 14 82 - -
Rops8g03578 403 MobiDBLite consensus disorder prediction 199 266 - -
Rops8g03578 403 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Rops8g03578 403 SMART ring_2 33 73 IPR001841 -
Rops8g03578 403 FunFam E3 ubiquitin-protein ligase RHF2A 4 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03578 Rops-Chr8 75834955 75845045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03578 30 79 C3H Transcription Factor Family AT5G15790 44.000 2.29e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03578 K19043 - gmx:100800419 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03578 8 75834955 75845045 Rops8g03578 8 75834955 75845045 ECH
Rops8g03578 8 75834955 75845045 Rops6g00752 6 19343922 19350024 PCT