Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03575 ATGGGAAACAATTGTGTGGGATCAAGAACCGCGAAAGATGGACTTTTTCTTCCAAGTTCATTCTGGTGGTTACAGCCAACGAGTGGAATAGTAGTTTCTTCACCTGTGAGTAAAAATCCAAACACAAATGCTTCAGAGACTGTTCAACAAAAGCCACCAAAGGTAGTGAAAATTGACAATGAAGTGATGAAGCCAGTTCAACCCAATAAACAGGACAAAGAGTCTAAGAAGCTCCATAATGCTAAGAGGCTAGCAGTAGCAACTGCCGGGCTTCAAGCAGAGTCAGTTTTGCTGAGAAAAACTGGTCATCTTAAAGAGTACTATAATTTGGGACCTGAACTTGGGCAAGGACAATATGGAACTACTTTCCTTTGTATGGAGAAAGCTACTGGGAAAGGTTATGCCTGCAAGTCCATCCCAAAGGTAAAATTGGTGAGAGATAATGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCACTTGGGGGGTTGTCCCAATGTGATCTCAATTAGAGAGGCTTATGAGGATGCTGTTTCTGTTCATGTTGTGATGGGATTATGTGCAGGAGGTGAGCTGTTTGATAGGATTGTGGAAAGGGGGCATTACAGTGAAAGAAAGGCTGCTAAACTTTCAAGGACTATAGCTAGTGTTATAGAGGCTTGTCACTCCCTTGGAGTAATGCATCGTGATCTTAAGCCCGAGAATTTTCTTTTCGTTGATGGGCATGAAGACTCCACCCTTAAGGCAATAGATTTTGGAAAGTCTGTTTTCTTCAAACCAGGAGACATTTTTAGTGATGTGGTGGGAAGTCCTTATTATATTGCACCTGAAGTTCTGCGCAAGTGTTATGGCCCAGAAGCTGATGTTTGGAGTGCAGGTGTGATCATATACATTCTCTTATGTGGAACACCTCCATTTTGGGGTGAATCCGACCAAGAGATATTTGAGGAGGTTTTGCATGGTGATCTTGATTTCTCTTCAGATCCTTGGCCGAGTATCTCTGAAAGTGCAAAAGACTTGGTTAGGAAGATGCTTGTCAGAGATCCTAGAAAACGGATAACAGCACATGAAGTTCTCCGTCACCCTTGGATTCAGGTTAATGGAGTTGCTCCAGATAAGCCCCTTGATTCTGCAGTTTTGAGTCGCCTGAAGCAGTTTTCAGCGATGAGCAAGCTTAAGAAAATGGTTCTTAGAGTTATTGCAGAGAATCTCTCTGAAGAAGAAATTTCTGGATTGAAAGAAATATTTAAGATGATAGACACAGACAACAGTGGTCAAATTACTTTTGAAAAACTCAAGGTTGGACTGAAAACGTTTGGTGCTAATCTCGGTGAATCTGAAATTTTCGATCTAATGCAAGCTGCGGATATTGATAACAGTGGCGCAATTGACTATGGAGAATTCATAGCAGCAACATTGCATTTAAACAAAGTTGAAAGAGGAGATCATTTATTTGCAGCTTTCTCATATTTTGATAAAGATGGAAGTGGCTACATCACTCAAGATGAGCTTCAACAAGCTTGTGAAGAATTTGGCATGGGGAATGTCCTCTTGGAGGAAATGATGCAAGAAGCTGATCAGAATAATGATGGCCGAATAGACTACAATGAATTTGTGGCTATGATGCAGAGAGGAAATACAGAATTAGTTAAGAGCAATCTAAAGGGTAGCACTAGTTTTAGCATTGGATTCAGGGAGGCAGTATCAGTGTGTTAA 1722 0.4117 MGNNCVGSRTAKDGLFLPSSFWWLQPTSGIVVSSPVSKNPNTNASETVQQKPPKVVKIDNEVMKPVQPNKQDKESKKLHNAKRLAVATAGLQAESVLLRKTGHLKEYYNLGPELGQGQYGTTFLCMEKATGKGYACKSIPKVKLVRDNDVEDVRREIQIMHHLGGCPNVISIREAYEDAVSVHVVMGLCAGGELFDRIVERGHYSERKAAKLSRTIASVIEACHSLGVMHRDLKPENFLFVDGHEDSTLKAIDFGKSVFFKPGDIFSDVVGSPYYIAPEVLRKCYGPEADVWSAGVIIYILLCGTPPFWGESDQEIFEEVLHGDLDFSSDPWPSISESAKDLVRKMLVRDPRKRITAHEVLRHPWIQVNGVAPDKPLDSAVLSRLKQFSAMSKLKKMVLRVIAENLSEEEISGLKEIFKMIDTDNSGQITFEKLKVGLKTFGANLGESEIFDLMQAADIDNSGAIDYGEFIAATLHLNKVERGDHLFAAFSYFDKDGSGYITQDELQQACEEFGMGNVLLEEMMQEADQNNDGRIDYNEFVAMMQRGNTELVKSNLKGSTSFSIGFREAVSVC* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03575 573 SUPERFAMILY EF-hand 395 546 IPR011992 -
Rops8g03575 573 ProSitePatterns EF-hand calcium-binding domain. 528 540 IPR018247 -
Rops8g03575 573 ProSitePatterns EF-hand calcium-binding domain. 494 506 IPR018247 -
Rops8g03575 573 SUPERFAMILY Protein kinase-like (PK-like) 106 367 IPR011009 -
Rops8g03575 573 ProSiteProfiles EF-hand calcium-binding domain profile. 445 480 IPR002048 GO:0005509
Rops8g03575 573 ProSiteProfiles Protein kinase domain profile. 108 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03575 573 Pfam EF-hand domain pair 426 476 IPR002048 GO:0005509
Rops8g03575 573 Pfam EF-hand domain pair 485 545 IPR002048 GO:0005509
Rops8g03575 573 CDD STKc_CAMK 108 365 - -
Rops8g03575 573 FunFam Calcium-dependent protein kinase 1 374 548 - -
Rops8g03575 573 CDD EFh 485 545 IPR002048 GO:0005509
Rops8g03575 573 FunFam Calcium-dependent protein kinase 1 110 193 - -
Rops8g03575 573 ProSiteProfiles EF-hand calcium-binding domain profile. 520 550 IPR002048 GO:0005509
Rops8g03575 573 PANTHER SERINE/THREONINE-PROTEIN KINASE 99 540 - -
Rops8g03575 573 Pfam Protein kinase domain 109 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03575 573 FunFam Calcium-dependent protein kinase SK5 194 378 - -
Rops8g03575 573 ProSiteProfiles EF-hand calcium-binding domain profile. 481 516 IPR002048 GO:0005509
Rops8g03575 573 Gene3D Phosphorylase Kinase; domain 1 111 193 - -
Rops8g03575 573 Gene3D Transferase(Phosphotransferase) domain 1 194 372 - -
Rops8g03575 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Rops8g03575 573 SMART efh_1 485 513 IPR002048 GO:0005509
Rops8g03575 573 SMART efh_1 413 441 IPR002048 GO:0005509
Rops8g03575 573 SMART efh_1 519 547 IPR002048 GO:0005509
Rops8g03575 573 SMART efh_1 449 477 IPR002048 GO:0005509
Rops8g03575 573 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Rops8g03575 573 ProSitePatterns EF-hand calcium-binding domain. 458 470 IPR018247 -
Rops8g03575 573 Gene3D - 373 549 - -
Rops8g03575 573 ProSiteProfiles EF-hand calcium-binding domain profile. 409 444 IPR002048 GO:0005509
Rops8g03575 573 SMART serkin_6 108 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03575 Rops-Chr8 75804420 75807485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03575 1 567 EF-hand Containing Proteins AT5G04870 64.600 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops8g03575 Pkinase 4.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03575 K13412 - gmx:100814475 895.575