Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03566 ATGGAAGGAAGAGAAAACACCACACCTCCCCAAACAGAAGAAGCCATTGCCATGACTAAGAGAAAGGTGACACTAAAATTGATTGATGATGTTACATTAAGAAAAGCTTGCTACAGAAAAAGACTTGCAGGGTTGTTAAAGAAGATGAAGGAGCTTAGCACCCTTTGTGATATCGATGCATGTGCTATCATCTTTGGTCCTGGTGATAAGAAACCTACGATATGGCCATCACCTATCGTGGCAAAACATCTTCTGCAGAGGCTTCAAAAAGATCCAGAGCTTGTTCGGTCAAGAAAAATGGTTGACCAAAGGGGTTATATGCGGGAGAAGACAAGAAGGGTAGAAGAGCAACTTGTGAAGATCAAGGAGAGGAATGATGAGAAAGAGATGTCAATTTTAATGCATCGTATCTATCATGATGGTAAGTCTTTATCTGATTTTGAGGCTGGTGATTTGAGGCGTTTACTTTGTTATGTGAAGGAAAAACTGAAGAGTGTTAGAAGGAGAACTGGCCGTTTTGAAGCGGTGGTGCCTCCTAATCCTCCACCACCACCACCATCTGTATCTTGTCCTCCACATGATGATATAGATTCTTGGTTTGACATAGATGAACAAGTTTCAGGGCAACAATCAATTTTAGATTTGGTGAAAGAAGCTGAACAGATGAATAATGGTTTTGATAACAACACAGCAGAGAGCAGCATGGGGCTACCACCACATACACATCTTAGTGATATTGATGTGGCCTTGCCTCAAGGGGTGTTTCCTCCAAACAATTTTGGAGTTCTTATTGGCGAAAGTGACTCAAGTTCAGGGATGTTGTTTTCAGGCAATTTTGAAGAGCTCGTTGGTGGAAGTGACTTAGGGTCAGGAGGACTATTACCTACAAGTAATTTTGGAGGTCTCAATGGTGAAAGTGATCATTCAAGGTCAGGAATGTTGTCTCAAGGCAATTTTGGAGGTCTTAATAATGAAAGTGATCACTTAGGAATGCTGTCTCAAGACAATTTGATAGGTCTCAATGTTGAAAATGACTTGGGGATGTTAGCTCAAGGCAATTTTAGAGGTTTCAATGATAAAAGTGGTCATCATTCATGGGTGTTACCTGAAGGCAATTTTGGAGGTTTCAATGTTAAAAGTGACTCAAGGATGTTGCCTCAACCTCAAGAGAATTTTATAAGATTCAATGGTGAAAGCAATTCAAAGCTTTTGTATGGAAGCTCTACTAGTGAAATTGGAGGCAGTGACATATGGCCATCTTATGGACAATTCGGAAGTACAATTGGTGGAAGTGATATAAGATTTCCCCATGGCTGCTCTGCAGGCAACATTGATGGAACTTACATAGGAGCAGGGAAGTATAATGAAAATCAAGGAGGGCCCACAGACAATATAGGATTATGGTGTCATCAAAACAACTTTGGAGTCAACAATAATGAAGCTGCCATGGGGAGATTGAATGCAAACTTTGTTGACACTAACAATGGAAGAAACTTGATTGCTCATGGAAATTTTGCTAGTAGTGGTGAAAGAAGTGATATGCAAGTGCCTATATCATTTGCAGGAAATTCTGCTAGAAGTTATTGGTGA 1590 0.4031 MEGRENTTPPQTEEAIAMTKRKVTLKLIDDVTLRKACYRKRLAGLLKKMKELSTLCDIDACAIIFGPGDKKPTIWPSPIVAKHLLQRLQKDPELVRSRKMVDQRGYMREKTRRVEEQLVKIKERNDEKEMSILMHRIYHDGKSLSDFEAGDLRRLLCYVKEKLKSVRRRTGRFEAVVPPNPPPPPPSVSCPPHDDIDSWFDIDEQVSGQQSILDLVKEAEQMNNGFDNNTAESSMGLPPHTHLSDIDVALPQGVFPPNNFGVLIGESDSSSGMLFSGNFEELVGGSDLGSGGLLPTSNFGGLNGESDHSRSGMLSQGNFGGLNNESDHLGMLSQDNLIGLNVENDLGMLAQGNFRGFNDKSGHHSWVLPEGNFGGFNVKSDSRMLPQPQENFIRFNGESNSKLLYGSSTSEIGGSDIWPSYGQFGSTIGGSDIRFPHGCSAGNIDGTYIGAGKYNENQGGPTDNIGLWCHQNNFGVNNNEAAMGRLNANFVDTNNGRNLIAHGNFASSGERSDMQVPISFAGNSARSYW* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03566 529 Gene3D - 30 114 IPR036879 GO:0003677|GO:0046983
Rops8g03566 529 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Rops8g03566 529 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Rops8g03566 529 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Rops8g03566 529 SUPERFAMILY SRF-like 18 94 IPR036879 GO:0003677|GO:0046983
Rops8g03566 529 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 70 IPR002100 GO:0003677|GO:0046983
Rops8g03566 529 CDD MADS_SRF_like 19 102 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops8g03566 529 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 223 - -
Rops8g03566 529 ProSiteProfiles MADS-box domain profile. 18 70 IPR002100 GO:0003677|GO:0046983
Rops8g03566 529 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03566 Rops-Chr8 75711530 75713279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03566 20 169 Type I MADS-box Gene Family AT1G65300 31.333 5.36e-22 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops8g03566 SRF-TF 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03566 - - gmx:106798339 291.582