Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03565 ATGGCTATGCAAACTGTTTATCTCAAAGAACATGAAGGAATTGCACACAATTATGTTGGACAGTTGTCATCTGCAACTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAATCTGTTTATGGTGAGTCTTATGGCCAAATGAAACCCTTTTCGTTGGAGCCACCTGCTTGTGTGGACCAACTTGGTGCCAGTAAGCAATCAGCTAGAGGAGCTGAACAAGTTTTGGGAAAAGGACATACAAATCAGTTTACCATCTTTCCAGATGATTGTAAGGTGTCAGGTGATGCACAAAAGCCTCATACAACCATATCACTGCAGACATCACTCACTGATACTCCCACTCGTTTTGAGCTAGGATTTAGTCAGCCTATGATCTGTGCAAAATATCCTTATACTGATCCATTTTATGGGCTCTTCTCAACTTATGGACCTCAAATTTCGGGTCGTATCATGCTGCCACTTAACATGACATCCGATGATGGACCAATTTACGTGAATGCTAAGCAATACCATGGAATCATTAGGCGTAGGCAGTCCCGCGCCAAAGCTGTACTTGATCACAAATTTACTAAAAGTCGTAAGCCCTATATGCATGAGTCACGCCATCGCCATGCAATGCGGCGACCAAGAGGATGCGGTGGTCGCTTTCTGAACACAAGGAATTCTGATAATGGAAATGGCAAAAGTGAAAGCAAAGTGAATAAATCTATTCGTGAACAATTGCATTCCAGTGGCTCTCATAGTTCTGAAGTCCTTCAATCTGAGGTTGGAACTTTGAACTCATCAAAGGAAACTAATGGAAGCAGTCCAAATATTTCAGAGGTGACTAGCATGTATTCAAGAGGAGGTCTTGACAGTTTTGCTGTCAATCATCTTGGATCTTCTGTTCACTCTATGGCAGACATGATAGAAGGTGGGCGTGGCATGCTCATTCCCACCAAGTGGATTACAGCAGCAGGTGGTGACTGCTATGACTGCAGGCTTGTCCTAACATCTGGTTTGAAGGCAATCCATCCTTGGCTCAATCTTAGGCAACTCATCCTTGGCTCAATGTAA 1056 0.4366 MAMQTVYLKEHEGIAHNYVGQLSSATSAPWWSAFGSQSVYGESYGQMKPFSLEPPACVDQLGASKQSARGAEQVLGKGHTNQFTIFPDDCKVSGDAQKPHTTISLQTSLTDTPTRFELGFSQPMICAKYPYTDPFYGLFSTYGPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDHKFTKSRKPYMHESRHRHAMRRPRGCGGRFLNTRNSDNGNGKSESKVNKSIREQLHSSGSHSSEVLQSEVGTLNSSKETNGSSPNISEVTSMYSRGGLDSFAVNHLGSSVHSMADMIEGGRGMLIPTKWITAAGGDCYDCRLVLTSGLKAIHPWLNLRQLILGSM* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03565 351 MobiDBLite consensus disorder prediction 190 274 - -
Rops8g03565 351 SMART cbf3 158 219 IPR001289 GO:0003700|GO:0006355
Rops8g03565 351 PRINTS CCAAT-binding transcription factor subunit B signature 193 216 IPR001289 GO:0003700|GO:0006355
Rops8g03565 351 PRINTS CCAAT-binding transcription factor subunit B signature 162 184 IPR001289 GO:0003700|GO:0006355
Rops8g03565 351 Gene3D - 160 220 - -
Rops8g03565 351 MobiDBLite consensus disorder prediction 194 210 - -
Rops8g03565 351 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 216 IPR001289 GO:0003700|GO:0006355
Rops8g03565 351 MobiDBLite consensus disorder prediction 238 274 - -
Rops8g03565 351 ProSiteProfiles NF-YA/HAP2 family profile. 159 219 IPR001289 GO:0003700|GO:0006355
Rops8g03565 351 MobiDBLite consensus disorder prediction 217 231 - -
Rops8g03565 351 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 66 280 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03565 Rops-Chr8 75667757 75672495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03565 1 326 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.353 4.09e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Rops8g03565 CBFB_NFYA 1.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03565 K08064 - gmx:100527677 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03565 8 75667757 75672495 Rops6g00775 6 19745481 19750622 PCT