Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03564 ATGGCTGCTACAACTTCTGTTACCTCTTCTATCTGCAACAGAATCTACAACCTCTCCTTCACCCACTCTTCCCTTTCACTCACCAGCAACTTCCCTCAAAGACCCATATCCCTGAAACCCCTCAATCTCATCCTCAAGTCCCAAAGTTTCACTCTTTCCCCTCTCTCACTTCACCGTCTTCATCCACAATCTGCTACCTTCGATGAATTCGAAGTGGGTCAAGACAGCACAGGTTCCCAACAAGACAACCCAGAACCAGAAACAGAAACAGAAACCTCTGATAAACCACAACAAGAGGAAGAGCCAAAGGTGTCAGACTCAAACGATGCTGGGAGACTCTATGTTGGAAACTTGCCATATTCAATGACTTCTTCTCAATTGGCTGAGATATTTGGAGAAGCTGGAACTGTGGTGTCTGTTGAGATAGTGTACGATCGGGTCACGGATAGGAGCAGAGGATTTGGATTTGTCACAATGGGGAGTGTTGAGGAGGCTAAAGAAGCAACTCGAATGTTTGATGGCTCCCAAGTTGGTGGTAGGACTGCTAAGGTAAACTTCCCAGAGGTGCCCAAAGGAGGTGAAAGGTTAGTGATGGGGCCAAAAATAAGGAACAACTATAGAGGCTTTGTAGACAGCCCTCACAAGATCTATGCCGGAAACCTTGGCTGGGGAATGACCTCTCAGGATCTTAGAGATGCTTTTGTTGAGCAGCCAGGCTTATTGAGTGCCAAGGTCATCTATGAGAGGGACAGTGGGAGATCTCGAGGTTTTGGGTTTGTCACTTTTGAAACTGCTGAAGATGTAGAGGCTGCTTTGAATGTTATGAATGGTGTGGAGGTTCAAGGTCGATCCATGCGATTGAATTTGGCTGCAGAGAGGACACCTTCATCTCCTCGAGTAACTACAGGAAGTAATGTTGATAGCTCGGAATTGCTGTCTAGTGCCAGCACCTGA 954 0.4675 MAATTSVTSSICNRIYNLSFTHSSLSLTSNFPQRPISLKPLNLILKSQSFTLSPLSLHRLHPQSATFDEFEVGQDSTGSQQDNPEPETETETSDKPQQEEEPKVSDSNDAGRLYVGNLPYSMTSSQLAEIFGEAGTVVSVEIVYDRVTDRSRGFGFVTMGSVEEAKEATRMFDGSQVGGRTAKVNFPEVPKGGERLVMGPKIRNNYRGFVDSPHKIYAGNLGWGMTSQDLRDAFVEQPGLLSAKVIYERDSGRSRGFGFVTFETAEDVEAALNVMNGVEVQGRSMRLNLAAERTPSSPRVTTGSNVDSSELLSSAST* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03564 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Rops8g03564 317 Gene3D - 203 303 IPR012677 -
Rops8g03564 317 MobiDBLite consensus disorder prediction 71 86 - -
Rops8g03564 317 SUPERFAMILY RNA-binding domain, RBD 107 188 IPR035979 GO:0003676
Rops8g03564 317 MobiDBLite consensus disorder prediction 292 317 - -
Rops8g03564 317 PANTHER OS02G0815200 PROTEIN 40 294 - -
Rops8g03564 317 Gene3D - 64 194 IPR012677 -
Rops8g03564 317 SMART rrm1_1 112 185 IPR000504 GO:0003723
Rops8g03564 317 SMART rrm1_1 215 288 IPR000504 GO:0003723
Rops8g03564 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 285 IPR000504 GO:0003723
Rops8g03564 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Rops8g03564 317 CDD RRM1_PSRP2_like 112 191 - -
Rops8g03564 317 CDD RRM2_NsCP33_like 215 290 - -
Rops8g03564 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Rops8g03564 317 MobiDBLite consensus disorder prediction 71 111 - -
Rops8g03564 317 SUPERFAMILY RNA-binding domain, RBD 211 300 IPR035979 GO:0003676
Rops8g03564 317 FunFam 33 kDa ribonucleoprotein, chloroplastic 196 300 - -
Rops8g03564 317 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03564 Rops-Chr8 75663740 75665983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03564 111 311 Eukaryotic Initiation Factors Gene Family AT3G16380 27.363 4.85e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03564 - - gmx:100814852 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03564 8 75663740 75665983 Rops6g00133 6 3454177 3457452 PCT