Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03562 ATGAATGAAAAGCAGCAGCAGCAAGAGCGTTTAAAAGGCAAGAGTCCACAACCAATTCCATTCAATTTGTTAATCCATCGTATCTTCAAAATCAAAAGCCTTCCCTTCCCTCTTCGTCACCCTCTTCTGTTTTTGGTTACCCATAAGAGAATGAACGACTTACTCTCCCGTTCCTTCTCCGACAAGGACAAGGACCACCACCACGTGATCCAGATGACGGAGGTTGCCACCACCACCAACCTCGCCAAGTTCTTCGAGGAAGTTGAGTCTGTTAAAGATGACCTGAAGGAGCTTCAACGCCTCCACCTCAGCCTCCGCACTTCCAACGAAAAAAGCAAGACCCTTCACAGCGCCAAAGCCGTCAAGGACCTTCGCTCTCGCATGGACGCTGACGTCTCACTCTCCCTCACAAAAGCTAAGCTTATTAAGGCCCGTTTGGAGGCCCTCGACCGGTCCAATGAAGCCACCCGGTCCATGCCCGATTGCGGACCCGGTTCATCCTCAGACCGAACCCGGTCCTCCGTGGTGAGCGGGTTGAGGAAGAATCTCAAAGACTCCATGGACAGTTTCAATAACCTGAGGGAACAGATATCCTCAGAGTATAGAGAAACCGTCCAACGTAGATACTACACTGTCACCGGAGAGAATCCTGATGATAAAACCATTGACCTCCTCATCTCCACTGGTGAGAGTGAAACATTTTTACAGAAAGCAATCCAACAGCAAGGGAGAGCTACCGTAATGGATACCATCCAAGAGATTCAGGAGAGGCATGGGGCGGTGAAAGAGATAGAGAGAAATTTGAATGAGCTGCACCAAGTGTTCTTGGACATGGCAGTGTTGGTCCAAACACAGGGTGAACAGTTGGATGACATAGAGAGCCACGTGGCTCGAGCTAATTCGTATGTGAGGGGAGGGGTCCAGCAGTTGCACGTTGCTAGGAAGAATCAGAAGAACACCCGTAAATGGACCTGTTTTGCCATTATATTGCTCCTTATTATCATATTGGTTATAGTTCTTCCTATTGTTTTGAGAAACTGA 1041 0.4851 MNEKQQQQERLKGKSPQPIPFNLLIHRIFKIKSLPFPLRHPLLFLVTHKRMNDLLSRSFSDKDKDHHHVIQMTEVATTTNLAKFFEEVESVKDDLKELQRLHLSLRTSNEKSKTLHSAKAVKDLRSRMDADVSLSLTKAKLIKARLEALDRSNEATRSMPDCGPGSSSDRTRSSVVSGLRKNLKDSMDSFNNLREQISSEYRETVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRATVMDTIQEIQERHGAVKEIERNLNELHQVFLDMAVLVQTQGEQLDDIESHVARANSYVRGGVQQLHVARKNQKNTRKWTCFAIILLLIIILVIVLPIVLRN* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03562 346 Coils Coil 81 101 - -
Rops8g03562 346 Pfam Syntaxin 83 286 IPR006011 GO:0016020
Rops8g03562 346 ProSitePatterns Syntaxin / epimorphin family signature. 257 296 IPR006012 GO:0005484|GO:0006886|GO:0016020
Rops8g03562 346 Pfam SNARE domain 287 339 IPR000727 -
Rops8g03562 346 Gene3D - 81 208 - -
Rops8g03562 346 MobiDBLite consensus disorder prediction 159 174 - -
Rops8g03562 346 SMART SynN_4 76 202 IPR006011 GO:0016020
Rops8g03562 346 FunFam Syntaxin 132 244 344 - -
Rops8g03562 346 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 78 208 - -
Rops8g03562 346 CDD SNARE_syntaxin1-like 250 310 - -
Rops8g03562 346 CDD SynN 81 238 IPR006011 GO:0016020
Rops8g03562 346 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 251 313 IPR000727 -
Rops8g03562 346 PANTHER SYNTAXIN 89 335 IPR045242 -
Rops8g03562 346 SUPERFAMILY t-snare proteins 81 306 IPR010989 GO:0016020|GO:0016192
Rops8g03562 346 Coils Coil 180 200 - -
Rops8g03562 346 Gene3D - 240 344 - -
Rops8g03562 346 SMART tSNARE_6 246 313 IPR000727 -
Rops8g03562 346 MobiDBLite consensus disorder prediction 152 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03562 Rops-Chr8 75654143 75655810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03562 80 325 SNARE and Associated Proteins AT3G11820 74.390 3.90e-133 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03562 K08486 - gmx:100793347 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03562 8 75654143 75655810 Rops6g00777 6 19766484 19768649 PCT