LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g03558	ATGGAAGAGATTGATGTCCCTTCGTTCTTTCTCTGCCCCATCTCATTAGAAATCATGAAGGATCCAGTGACTGTCTCCACTGGTATCACCTATGATAGAGAGAACATTGAGAAGTGGCTATTTTCCATGAAAAACAAGACATGTCCTGTTACCAAACAACCTCTCTCAGATTCCACTGATCTCACTCCCAACCACACCCTTAGGAGATTGGTTCAAGCATGGTGTACCATGAACGCTTCTCATGGCATAGAAAGGATTCCAACTCCTAAGCCTCCAGTCAACAAAATCCAGATCTCAAAGCTTCTCAAAGATGCTTCTATTTCACCTCTTATGCAGATTAAATGTCTCCACAAGCTTAAATCCATCGCTTCTGGGAGTGAAACAAACAAACGTTGCATGGAAGCTGCCGGTACTGTTGAATTCTTAGCATCTATTGTGATGAATAGCAACAATTTTGCATCTCCATCTGAATTATTAGAGGCCAACCCAGATGATGGGTTTGAGTTGAAAACTAGTGCAGTTGACGAAGCCTTAAGCATACTCCATAATCTTCATGTGTCTGAAGCTGGATTGAAAGCTCTCACAGGCTTTAGAAATGGAGAAATTATTGACTCCTTAACAAGGGTCATGCAAAAGGGGTTCTTCGAGTCACGAGCTTATGCAGTTTTCTTGTTGAAATCTATGTCTGAAGTGGCTGATTCAGTGTATTTAACCCGTTTAAGAACTGAATTGTTCGTTGAATTAGTGCAAGTTTTGAAGGATCAGATTTCACAAAAGACATCAAAAGCAACACTCCACACACTGATCCAACTTTGTCCTTGGGGGAGAAACAAGATCAAAGCTGTGGAAGCAGGAACTGTTCCTGTTTTGATAGAACAACTTCTTGACTGTAAAGAGAGAAAGCCTTGTGAAATGATCCTAGTGCTATTGGAATCACTGTGCCAGTGTGCTGAGGGAAGAGCAGAACTTTTGAATCATGGAGCAGGACTTGCCATAGTGTCAAAAAAGATTCTAAGGGTTTCAACATTGGTAAATGACAGGGCTGTGAGGATTTTGCTTTCTATCTCAAAGTTCTCTGCAACTCCAACTGTTGTTCAAGAAATGTTGAAACTTGGTGTGGTGGCAAAACTATGTTTGATGCTTCAAGTGGATACTGGAAACAAGGTGAACGAGAAAGCAGCAGAGATACTCAAAATGCATGCTAATGCATGGAGGAATTCTCCGTGCATACCTAGCAGTTTGCTTTCTTCCTACCCATCTTGTGTGTGA	1269	0.4145	MEEIDVPSFFLCPISLEIMKDPVTVSTGITYDRENIEKWLFSMKNKTCPVTKQPLSDSTDLTPNHTLRRLVQAWCTMNASHGIERIPTPKPPVNKIQISKLLKDASISPLMQIKCLHKLKSIASGSETNKRCMEAAGTVEFLASIVMNSNNFASPSELLEANPDDGFELKTSAVDEALSILHNLHVSEAGLKALTGFRNGEIIDSLTRVMQKGFFESRAYAVFLLKSMSEVADSVYLTRLRTELFVELVQVLKDQISQKTSKATLHTLIQLCPWGRNKIKAVEAGTVPVLIEQLLDCKERKPCEMILVLLESLCQCAEGRAELLNHGAGLAIVSKKILRVSTLVNDRAVRILLSISKFSATPTVVQEMLKLGVVAKLCLMLQVDTGNKVNEKAAEILKMHANAWRNSPCIPSSLLSSYPSCV*	423

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops8g03558	422	Gene3D	-	96	412	IPR011989	-
Rops8g03558	422	ProSiteProfiles	U-box domain profile.	5	81	IPR003613	GO:0004842\|GO:0016567
Rops8g03558	422	Pfam	U-box domain	6	78	IPR003613	GO:0004842\|GO:0016567
Rops8g03558	422	SUPERFAMILY	ARM repeat	100	399	IPR016024	-
Rops8g03558	422	SMART	Ubox_2	9	74	IPR003613	GO:0004842\|GO:0016567
Rops8g03558	422	PANTHER	WDSAM1 PROTEIN	2	411	IPR045185	GO:0061630
Rops8g03558	422	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	85	IPR013083	-
Rops8g03558	422	CDD	RING-Ubox_PUB	7	59	IPR045210	-
Rops8g03558	422	FunFam	RING-type E3 ubiquitin transferase	1	84	-	-
Rops8g03558	422	SUPERFAMILY	RING/U-box	3	82	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g03558	Rops-Chr8	75601722	75603310	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g03558	2	420	U-box Gene Family	AT3G52450	56.452	2.14e-175	495

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g03558	-		-	gmx:100809123	669.463

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Rops8g03558	8	75601722	75603310	Rops8g03558	8	75601722	75603310	ECH
Rops8g03558	8	75601722	75603310	Rops6g00787	6	19999474	20000682	PCT
Rops6g00785	6	19917532	19918722	Rops8g03558	8	75601722	75603310	PCT

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