Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03558 ATGGAAGAGATTGATGTCCCTTCGTTCTTTCTCTGCCCCATCTCATTAGAAATCATGAAGGATCCAGTGACTGTCTCCACTGGTATCACCTATGATAGAGAGAACATTGAGAAGTGGCTATTTTCCATGAAAAACAAGACATGTCCTGTTACCAAACAACCTCTCTCAGATTCCACTGATCTCACTCCCAACCACACCCTTAGGAGATTGGTTCAAGCATGGTGTACCATGAACGCTTCTCATGGCATAGAAAGGATTCCAACTCCTAAGCCTCCAGTCAACAAAATCCAGATCTCAAAGCTTCTCAAAGATGCTTCTATTTCACCTCTTATGCAGATTAAATGTCTCCACAAGCTTAAATCCATCGCTTCTGGGAGTGAAACAAACAAACGTTGCATGGAAGCTGCCGGTACTGTTGAATTCTTAGCATCTATTGTGATGAATAGCAACAATTTTGCATCTCCATCTGAATTATTAGAGGCCAACCCAGATGATGGGTTTGAGTTGAAAACTAGTGCAGTTGACGAAGCCTTAAGCATACTCCATAATCTTCATGTGTCTGAAGCTGGATTGAAAGCTCTCACAGGCTTTAGAAATGGAGAAATTATTGACTCCTTAACAAGGGTCATGCAAAAGGGGTTCTTCGAGTCACGAGCTTATGCAGTTTTCTTGTTGAAATCTATGTCTGAAGTGGCTGATTCAGTGTATTTAACCCGTTTAAGAACTGAATTGTTCGTTGAATTAGTGCAAGTTTTGAAGGATCAGATTTCACAAAAGACATCAAAAGCAACACTCCACACACTGATCCAACTTTGTCCTTGGGGGAGAAACAAGATCAAAGCTGTGGAAGCAGGAACTGTTCCTGTTTTGATAGAACAACTTCTTGACTGTAAAGAGAGAAAGCCTTGTGAAATGATCCTAGTGCTATTGGAATCACTGTGCCAGTGTGCTGAGGGAAGAGCAGAACTTTTGAATCATGGAGCAGGACTTGCCATAGTGTCAAAAAAGATTCTAAGGGTTTCAACATTGGTAAATGACAGGGCTGTGAGGATTTTGCTTTCTATCTCAAAGTTCTCTGCAACTCCAACTGTTGTTCAAGAAATGTTGAAACTTGGTGTGGTGGCAAAACTATGTTTGATGCTTCAAGTGGATACTGGAAACAAGGTGAACGAGAAAGCAGCAGAGATACTCAAAATGCATGCTAATGCATGGAGGAATTCTCCGTGCATACCTAGCAGTTTGCTTTCTTCCTACCCATCTTGTGTGTGA 1269 0.4145 MEEIDVPSFFLCPISLEIMKDPVTVSTGITYDRENIEKWLFSMKNKTCPVTKQPLSDSTDLTPNHTLRRLVQAWCTMNASHGIERIPTPKPPVNKIQISKLLKDASISPLMQIKCLHKLKSIASGSETNKRCMEAAGTVEFLASIVMNSNNFASPSELLEANPDDGFELKTSAVDEALSILHNLHVSEAGLKALTGFRNGEIIDSLTRVMQKGFFESRAYAVFLLKSMSEVADSVYLTRLRTELFVELVQVLKDQISQKTSKATLHTLIQLCPWGRNKIKAVEAGTVPVLIEQLLDCKERKPCEMILVLLESLCQCAEGRAELLNHGAGLAIVSKKILRVSTLVNDRAVRILLSISKFSATPTVVQEMLKLGVVAKLCLMLQVDTGNKVNEKAAEILKMHANAWRNSPCIPSSLLSSYPSCV* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03558 422 Gene3D - 96 412 IPR011989 -
Rops8g03558 422 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Rops8g03558 422 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Rops8g03558 422 SUPERFAMILY ARM repeat 100 399 IPR016024 -
Rops8g03558 422 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Rops8g03558 422 PANTHER WDSAM1 PROTEIN 2 411 IPR045185 GO:0061630
Rops8g03558 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Rops8g03558 422 CDD RING-Ubox_PUB 7 59 IPR045210 -
Rops8g03558 422 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Rops8g03558 422 SUPERFAMILY RING/U-box 3 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03558 Rops-Chr8 75601722 75603310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03558 2 420 U-box Gene Family AT3G52450 56.452 2.14e-175 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03558 - - gmx:100809123 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03558 8 75601722 75603310 Rops8g03558 8 75601722 75603310 ECH
Rops8g03558 8 75601722 75603310 Rops6g00787 6 19999474 20000682 PCT
Rops6g00785 6 19917532 19918722 Rops8g03558 8 75601722 75603310 PCT