Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03556 ATGGCTACATACTATCATGACACTACGGCACAGCCACCAGCACCACCGTCACATGTTGCCGGCAACCTTGTCTTTCTTAACGCTGCCGCCACCAGCAACAACAACAACAACTCCTTCACACCCCACGCGCCACCCACTCACACCCAACAATTTGTTGGCATCCCTCTATCTGCTTCTCAAGACCTTAACCACCACCAGCAGCACTCCATGCATGCTCACCATGACGTTCCTCCCTTGCATGGCTTCCTGCCACAGTACAATCTTTGGAACACAATTGACCGAAACTCTGCGGCGCGTGAGACACCACGCGCTCAGCAAGGGCTGTCTCTTAGCCTCTCCTCCCAGCAAGCACGGTTGGGGTCTTTTCGTGAGGGTCAGGCGCCTGCTATGTCTGGTGGGTCACCTTCTTCAGCTTCTGGGGTTACTAACAATGGTGCTTCCGGGATTCAGAGTGTGCTATTGAGCTCAAAGTATTTGAAGGCAGCACATGAGCTTCTAGAAGAGGTGGTGAATGTTAACAATGGGATTAGTACTGAATTGACAAAGAAGAGTGGTGAAAAGACCAAGGTGATTGGAGAGTCATCTGCAGCAGCTAGTGGAGATGGTTCAATTGGTGGGGAGGGGAGTGGGAAGCGTAGTACTGAACTATCAACTGCAGAAAGACAAGAAATTCAGATGAAGAAGGCAAAGCTAATCAGCATGCTTGATGAGGTGGAGCAAAGGTACAGACAGTACCACCATCAGATGGAGATTGTGGTTTCTTCATTTGAACAAGCTGCAGGGATTGGCTCAGCGAGGACTTACACTGCCCTTGCACTACAAACAATTTCAAAGCAGTTTAGGTGTTTGAAAGATGCCATAACAGGCCAAATTCGAGCTGCAAATAAGAGCTTGGGAGAAGAAGATTGCTTTGGAGGTAAAATTGAAGGTTCAAGGCTGAAATATGTAGACCATCATCTGCGGCAACAGAGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAAAGATCAGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTCCTCCACCCTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGGCTTACTAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTAGAAGAAATGTATTTGGAGGAGATGAAGGAGCATGAACAGAATGGTTCTGAGGATAAATCAAGTAAGAGCAATGAAGATATGAAAATGGCAGCCCCTCAAGAGAAAGGTCCAACCTCAGAAACCGAGGCTAAAAGTTTCAATAGTTCCAAACAAGACGTTTCTAAAGGCCAGAACACTTCAATAGTTTCAGTTTCTAGACCATCAGCAGCAGCACCGCTTGGAGGAAATGTGAGAAACCAATCAGGATTCAGCTTCATTGGGTCATCAGAACTTGAAGGGATCACACAAGGAAGTCCCAAGAAACCAAGGAACAATGAAATTATGCATTCCCCAAATAATGTCCATTCAATTAACATGGATGTCAAGCCCAATGAGCAATTATCAATGAAATTTGGAGATGAGAGGCAGGGCAGAGATGGTTACTCTTTTATGGGAAACCAAACAAACTTCATTGGTGGTTTTGGACAGTACCCAATTGGGGATATTGGTAGGTTTGATGCAGAGCAATTCACACCAAGGTTTTCAGGTAATGGGGTTTCTCTTACTCTTGGTCTTGACTCATTACCAGGAACCCATCAAACATTTCTCCCAAACCAGAACATTCAACTGGGAAGAAGCCTTGACATCAGTGAACCAAATGAGTTTGGTGCCATAAACACTTCCTCTCCTCACTCTACTGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGGCCTAA 1950 0.4595 MATYYHDTTAQPPAPPSHVAGNLVFLNAAATSNNNNNSFTPHAPPTHTQQFVGIPLSASQDLNHHQQHSMHAHHDVPPLHGFLPQYNLWNTIDRNSAARETPRAQQGLSLSLSSQQARLGSFREGQAPAMSGGSPSSASGVTNNGASGIQSVLLSSKYLKAAHELLEEVVNVNNGISTELTKKSGEKTKVIGESSAAASGDGSIGGEGSGKRSTELSTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHEQNGSEDKSSKSNEDMKMAAPQEKGPTSETEAKSFNSSKQDVSKGQNTSIVSVSRPSAAAPLGGNVRNQSGFSFIGSSELEGITQGSPKKPRNNEIMHSPNNVHSINMDVKPNEQLSMKFGDERQGRDGYSFMGNQTNFIGGFGQYPIGDIGRFDAEQFTPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDISEPNEFGAINTSSPHSTAAYESISMQNPKRFAAQLLPDFVA* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03556 649 MobiDBLite consensus disorder prediction 192 220 - -
Rops8g03556 649 SMART prehox3 147 289 IPR006563 -
Rops8g03556 649 MobiDBLite consensus disorder prediction 408 459 - -
Rops8g03556 649 Pfam Associated with HOX 152 288 IPR006563 -
Rops8g03556 649 SUPERFAMILY Homeodomain-like 338 404 IPR009057 -
Rops8g03556 649 MobiDBLite consensus disorder prediction 437 459 - -
Rops8g03556 649 SMART HOX_1 337 401 IPR001356 GO:0003677
Rops8g03556 649 MobiDBLite consensus disorder prediction 97 117 - -
Rops8g03556 649 MobiDBLite consensus disorder prediction 490 516 - -
Rops8g03556 649 Pfam Homeobox KN domain 354 393 IPR008422 GO:0003677|GO:0006355
Rops8g03556 649 Gene3D - 340 419 - -
Rops8g03556 649 ProSiteProfiles 'Homeobox' domain profile. 334 397 IPR001356 GO:0003677
Rops8g03556 649 FunFam BEL1-like homeodomain protein 9 340 402 - -
Rops8g03556 649 CDD homeodomain 337 398 IPR001356 GO:0003677
Rops8g03556 649 Coils Coil 221 241 - -
Rops8g03556 649 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 62 422 - -
Rops8g03556 649 MobiDBLite consensus disorder prediction 408 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03556 Rops-Chr8 75563332 75567447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03556 42 649 Homeobox Transcription Factor Family AT2G35940 52.836 3.70e-171 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops8g03556 POX 1.7e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03556 - - gmx:100810901 1026.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03556 8 75563332 75567447 Rops8g03556 8 75563332 75567447 ECH
Rops8g03556 8 75563332 75567447 Rops6g00788 6 20036876 20041224 PCT