Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops8g03551 | ATGGACGGCTCTTCTGGAATCTTCCTTTCCACTCTCCTCTTTCTCCTCCCTCTACTAGTCCTCACCGCCACTGACCCTAACGACGTCAAAATCTTAAACCAGTTCAGAAAAGGGTTACAGAACCCAGAGCTTCTACCGTGGCCCGAAGAAGGTGGTGACCCATGTGGAGACCCGGGTTGGAAATACATCTATTGCGAAGGTGAGAGAGTGCAACAGATTCAAACTAAATACTTGAACCTCACTGGTCCTTTACCTCAGAATCTAAACCAGCTCACTGAACTTTCCAACTTGGGTCTTCAAAACAACAAGCTCAACGGTCCCTTACCATCGTTGAAAGGGTTGTCGAAGCTTCAATATGCGTTTTTTGACAACAACGACTTCGATTCTATCCCTTCGGATTTCTTCGATGGGCTTGAGAGTTTGGAGGTTATGGCATTGGATAACAATGATTTGAATGTTAGCACTGGTGGGTGGGAATTCCCTTCTTCTTTGCAGGGTTCAACGCAGTTGACCAATCTTACTTGCATGCGTTGCAACTTGAAGGGTCACTTGCCGGATTTTCTAAGAGAGATGAACTCTTTGTCGTTTTTGAAGCTTTCTGGCAACAATTTAACCGGCGAGATTCCGGTGAGTCTTAACGGTTCTGCTTTGCAGGTTCTCTGGTTGAATGACCAGAATGGTGAGGGTCTAACTGGGAATATTGATGTGGTGGGTTTCATGGTTTCTCTTACAAGTTTGTGGCTTCATGGGAATCACTTCACTGGTTCAATTCCTGGGAACATTGGGGACTTGGCTTCTCTCAAGGAGCTTAATCTCAATGGCAACAGTTTTGTTGGTTTAATCCCTGATGCTTTAGGTAACATGGAATTGGACAACCTAGATTTGAACAATAACATGTTGATGGGTCCGATCCCAAATTTCAAAGCATCTAAAGTCTCTTATGATAACAATCATTTTTGTCAAAGCAAACCAGGGATTCCCTGTGCCTTTGAAGTCATGGCTTTACTTGGATTTCTTGGCGGGTTGAATTATCCTTCAAATCTAGTTGATTCATGGAATGGTAATAACCCTTGTGAGGGACCTTGGCTGGGAATAAAGTGCAATGCCAATGGAAAGGTATTTATGATTAATTTGCCAAAATCTAATTTTAATGGTACTCTAAGTCCTTCTGTTGGAAATTTAAATTCTCTTGTTGAAATCAGATTAGGGGGTAACAATCTCAGTGGTGTAGTACCTAGTAACTGGACTAGTTTGATGTCTCTGAAATTGTTGGATCTGAGTGGTAATAACATTTCTCCTCCACTGCCAAAGTTTACTAATGGTTTGAAACCTATGATTAATGGGAATCCTCTATTCAATGGTAACCCTGAAGCTCCTTCCTCAGGGAACAACAACAACCCATCAGCTGGATCTGGGAATGCTGAACCTACACCAGCAAACTCAAATTCAAGTGAAACAAAAAAATCCAAAAGGAAAGGCTTGGTTTTGATTGTAGCCCCCATTGTAGGTGTGGCAGCTGCAGCTTTTCTGCTCATTCCACTTTATGCATATTGTTTCAGGAGGAGAAAGGATGGTCTACAGGCTCCAGCTTCACTAGTAATTCATCCTAGAGATCCATCTGATTCAGACAGTACTGTAAAGATAGCTGTTGCTAATAATACCAATGGAAGCATTTCCACTGTGAGTGGGACTGGAAGTAGAAACAGCAGTGGAATTGGGGAGTCTCATGTCATTGAAGCTGGAAATCTTGTGATATCAGTTCAAGTTCTAAGAAATGTGACCAAGAATTTTGCCCCTGAGAATGAGCTTGGCCGTGGTGGATTTGGGGTTGTTTATAAGGGAGAGTTGGATGATGGGACTAAAATTGCAGTAAAACGAATGGAAGCAGGTGTGATTAGTAATAAGGCCTTGGATGAATTCCAGGCTGAAATTGCAGTTCTATCGAAAGTTCGGCATAGGCATCTAGTGTCCCTTTTGGGTTATTCCATTGAAGGCAATGAGAGGATTCTAGTATATGAGTATATGCCACAAGGGGCTCTCAGTCAGCATCTTTTCCATTGGAAGAGATTGGAATTGGAGCCCCTCTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTTGCTAGGGGAATGGAGTATCTTCATAATTTGGCTCACCAAAGCTTCATTCACAGAGATCTTAAGTCGTCAAACATTCTGCTTGCTGATGATTTCAGAGCAAAAATCTCAGATTTTGGATTGGTAAAACTTGCTCCTGAAGGCGAAAAATCTGTAGTGACCCGGCTTGCTGGGACTTTTGGATACTTGGCTCCAGAATATGCAGTGACAGGAAAAATCACTACCAAAGCAGATGTTTTCAGTTTTGGGGTTGTGCTAATGGAGCTGTTGACTGGATTGATGGCACTTGATGAGGATAGACCCGAGGAAAGCCAATACTTGGCAGCATGGTTCTGGCACATAAAATCAGACAAGAAGAAACTAATGGCTGCTATTGACCCTGTCCTCGACATAAAGGAAGAAACATTTGAGAGCATCTCCATCATTGCTGAGCTAGCTGGGCACTGCACTGCAAGAGAACCAAGCCAAAGGCCAGATATGGGTCATGCTGTGAATGTTTTGGCACCACTTGTTGAAAAATGGAAGCCATTTGATGATGACACTGAGGAGTATTCTGGCATTGATTATAGCCTTCCCCTTAACCAAATGGTGAAGGGGTGGCAAGAGGCAGAAGGAAAGGACTTGAGTTATATGGACTTACAAGACAGTAAGAGTAGTATCCCTGCAAGGCCTACTGGATTTGCAGATTCTTTTACTTCAGCTGATGGCCGGTGA | 2832 | 0.4308 | MDGSSGIFLSTLLFLLPLLVLTATDPNDVKILNQFRKGLQNPELLPWPEEGGDPCGDPGWKYIYCEGERVQQIQTKYLNLTGPLPQNLNQLTELSNLGLQNNKLNGPLPSLKGLSKLQYAFFDNNDFDSIPSDFFDGLESLEVMALDNNDLNVSTGGWEFPSSLQGSTQLTNLTCMRCNLKGHLPDFLREMNSLSFLKLSGNNLTGEIPVSLNGSALQVLWLNDQNGEGLTGNIDVVGFMVSLTSLWLHGNHFTGSIPGNIGDLASLKELNLNGNSFVGLIPDALGNMELDNLDLNNNMLMGPIPNFKASKVSYDNNHFCQSKPGIPCAFEVMALLGFLGGLNYPSNLVDSWNGNNPCEGPWLGIKCNANGKVFMINLPKSNFNGTLSPSVGNLNSLVEIRLGGNNLSGVVPSNWTSLMSLKLLDLSGNNISPPLPKFTNGLKPMINGNPLFNGNPEAPSSGNNNNPSAGSGNAEPTPANSNSSETKKSKRKGLVLIVAPIVGVAAAAFLLIPLYAYCFRRRKDGLQAPASLVIHPRDPSDSDSTVKIAVANNTNGSISTVSGTGSRNSSGIGESHVIEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISNKALDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMPQGALSQHLFHWKRLELEPLSWKRRLNIALDVARGMEYLHNLAHQSFIHRDLKSSNILLADDFRAKISDFGLVKLAPEGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWHIKSDKKKLMAAIDPVLDIKEETFESISIIAELAGHCTAREPSQRPDMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEGKDLSYMDLQDSKSSIPARPTGFADSFTSADGR* | 944 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops8g03551 | 943 | Pfam | Leucine rich repeat N-terminal domain | 26 | 65 | IPR013210 | - | |
| Rops8g03551 | 943 | Pfam | Leucine rich repeat N-terminal domain | 332 | 368 | IPR013210 | - | |
| Rops8g03551 | 943 | MobiDBLite | consensus disorder prediction | 453 | 484 | - | - | |
| Rops8g03551 | 943 | FunFam | Receptor-like kinase TMK4 | 26 | 325 | - | - | |
| Rops8g03551 | 943 | Pfam | Protein tyrosine and serine/threonine kinase | 600 | 871 | IPR001245 | GO:0004672|GO:0006468 | |
| Rops8g03551 | 943 | Gene3D | Ribonuclease Inhibitor | 25 | 326 | IPR032675 | - | |
| Rops8g03551 | 943 | ProSitePatterns | Protein kinases ATP-binding region signature. | 603 | 625 | IPR017441 | GO:0005524 | |
| Rops8g03551 | 943 | SUPERFAMILY | Protein kinase-like (PK-like) | 573 | 873 | IPR011009 | - | |
| Rops8g03551 | 943 | Gene3D | Transferase(Phosphotransferase) domain 1 | 675 | 893 | - | - | |
| Rops8g03551 | 943 | CDD | STKc_IRAK | 603 | 876 | - | - | |
| Rops8g03551 | 943 | ProSiteProfiles | Protein kinase domain profile. | 597 | 877 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Rops8g03551 | 943 | FunFam | receptor protein kinase TMK1 | 675 | 892 | - | - | |
| Rops8g03551 | 943 | FunFam | receptor protein kinase TMK1 | 559 | 674 | - | - | |
| Rops8g03551 | 943 | FunFam | Leucine-rich repeat receptor-like kinase | 330 | 455 | - | - | |
| Rops8g03551 | 943 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 722 | 734 | IPR008271 | GO:0004672|GO:0006468 | |
| Rops8g03551 | 943 | Gene3D | Phosphorylase Kinase; domain 1 | 560 | 674 | - | - | |
| Rops8g03551 | 943 | SUPERFAMILY | L domain-like | 24 | 309 | - | - | |
| Rops8g03551 | 943 | SMART | LRR_typ_2 | 114 | 137 | IPR003591 | - | |
| Rops8g03551 | 943 | SMART | LRR_typ_2 | 394 | 417 | IPR003591 | - | |
| Rops8g03551 | 943 | SMART | LRR_typ_2 | 418 | 442 | IPR003591 | - | |
| Rops8g03551 | 943 | SMART | LRR_typ_2 | 191 | 215 | IPR003591 | - | |
| Rops8g03551 | 943 | SMART | LRR_typ_2 | 264 | 287 | IPR003591 | - | |
| Rops8g03551 | 943 | SMART | LRR_typ_2 | 240 | 263 | IPR003591 | - | |
| Rops8g03551 | 943 | PANTHER | OSJNBA0070M12.3 PROTEIN | 11 | 943 | - | - | |
| Rops8g03551 | 943 | Gene3D | Ribonuclease Inhibitor | 330 | 454 | IPR032675 | - | |
| Rops8g03551 | 943 | MobiDBLite | consensus disorder prediction | 921 | 943 | - | - | |
| Rops8g03551 | 943 | SMART | serkin_6 | 597 | 877 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Rops8g03551 | 943 | MobiDBLite | consensus disorder prediction | 446 | 487 | - | - | |
| Rops8g03551 | 943 | SUPERFAMILY | L domain-like | 331 | 443 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops8g03551 | Rops-Chr8 | 75434578 | 75438316 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops8g03551 | 79 | 878 | Receptor kinase-like Gene Family | AT5G07280 | 33.374 | 9.78e-86 | 297 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-IX | Rops8g03551 | PK_Tyr_Ser-Thr | 8.2e-47 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops8g03551 | - | - | gmx:100305366 | 1481.85 |