Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03522 ATGTCGATAAACCAGGAGACACCAGAGAGAACGCTATGGTGGAATCAGCAACAACAGCAAAACCCATCCATCACCATTCAGCCCCAATTGTACAACAACAACAACCACCAAGCCACGTGGCTCAATTCCAACACACCGCAGCACCGTTTCAACCTCAACATCGAAGACCAAGAAGAAGACCAAAACGACGACGTAATGGAAGAAGCGGAGGAAGGTGGCACCACGCAAGAAGAGGAGAAGGAACCAATGTTCGAGAAGTCATTGACTCCCAGCGACGTTGGCAAGCTCAACCGTCTCGTTATCCCGAAACAGCACGCCGAGAAGTACTTCCCACTCGGTGGTGGTGGTGCTGACTCAGGGCTTCTACTGAGTTTCGAGGACGAGTCAGGTAAGTGTTGGCGGTTCCGTTACTCGTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGTTGGAGCCGTTACGTTAAGGACAAGCGCCTCGATGCTGGCGACGTCGTTTTGTTCCTCAGACACCGTGTCGATTCTCACCGCTTCTTCATAACCTGGAGGCGCCGCCACGCAACCCCACCTGCGCATGTTAGCACCACCAGTGACGGGAATGGCCCTGTGCATCCCAGAGGGTATCCTTATCCTACTACGCATCATCATCATCATCATCATCATCACTCCTTGCCATATCAACCTGACTCTCTTCATGCAGGTGGAGAGTCCCAAGGTCAGAACCAAATCACACAAGGTGGAAACAGTTCCAGTTCAAGTTCCAGTTCAGGTTCCAAGATGCTGAGGCTATTTGGGGTTAACATGGAATGCAAACCTGATATTGATTCTGAAACCTTCACACCTGAATCCTCAGCTACCCAACAATTCTACTACCACCATAATCAACCTTCTCATTCTTCTTCTAACCCTCACCATCATATACTACGTCAACAACCATTTTAG 945 0.4952 MSINQETPERTLWWNQQQQQNPSITIQPQLYNNNNHQATWLNSNTPQHRFNLNIEDQEEDQNDDVMEEAEEGGTTQEEEKEPMFEKSLTPSDVGKLNRLVIPKQHAEKYFPLGGGGADSGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFLRHRVDSHRFFITWRRRHATPPAHVSTTSDGNGPVHPRGYPYPTTHHHHHHHHHSLPYQPDSLHAGGESQGQNQITQGGNSSSSSSSSGSKMLRLFGVNMECKPDIDSETFTPESSATQQFYYHHNQPSHSSSNPHHHILRQQPF* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03522 314 Gene3D - 72 194 IPR015300 -
Rops8g03522 314 MobiDBLite consensus disorder prediction 57 89 - -
Rops8g03522 314 MobiDBLite consensus disorder prediction 294 314 - -
Rops8g03522 314 CDD B3_DNA 82 177 IPR003340 GO:0003677
Rops8g03522 314 MobiDBLite consensus disorder prediction 190 259 - -
Rops8g03522 314 MobiDBLite consensus disorder prediction 234 259 - -
Rops8g03522 314 SUPERFAMILY DNA-binding pseudobarrel domain 80 186 IPR015300 -
Rops8g03522 314 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 18 289 IPR044800 GO:0003700
Rops8g03522 314 MobiDBLite consensus disorder prediction 57 75 - -
Rops8g03522 314 ProSiteProfiles B3 DNA-binding domain profile. 84 187 IPR003340 GO:0003677
Rops8g03522 314 Pfam B3 DNA binding domain 84 186 IPR003340 GO:0003677
Rops8g03522 314 SMART B3_2 84 187 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03522 Rops-Chr8 74884961 74886468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03522 77 274 RAV Transcription Factor Family AT5G06250 52.885 5.66e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g03522 B3 4.3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03522 K09287 - gmx:100781153 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03522 8 74884961 74886468 Rops8g03522 8 74884961 74886468 ECH
Rops8g03522 8 74884961 74886468 Rops6g00833 6 21142540 21144747 PCT