Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03518 ATGGCTCTGCAACACTCCAATTCCATGGCGGCCATCAGAAGAATAATTGGGTCTCATAAAACCCTCTCTCCATTTCTTCTCACTTTCCGCAGAGCAATTTCTTTCAAGCTTTTCGTTGGAGGACTGTCCTTCTACACGACAGAGAAAACATTGTCAGATGCATTCTCCAATCATGGACAAGTTATTGAAGCTAAAATAATAACAGATAGGGTGTCAGAAAGATCTAAAGGGTTTGGGTTTGTCACCTTTGCTTCACAAGATGAAGCTGAGAATGCCATAGCAGAGATGAATGGGAAGGCACTAAATGGGCGTGTTGTCTTTGTTGATTATGCAAAAGCCAATACCAAAACTGGTTTTCAAATGCCAATTGCCAGAGGACCCCCTGAAAACCTGAACCAACAGCAAACAGAGGATTCCCCTCAGGCCTTGTGA 432 0.4329 MALQHSNSMAAIRRIIGSHKTLSPFLLTFRRAISFKLFVGGLSFYTTEKTLSDAFSNHGQVIEAKIITDRVSERSKGFGFVTFASQDEAENAIAEMNGKALNGRVVFVDYAKANTKTGFQMPIARGPPENLNQQQTEDSPQAL* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03518 143 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 105 IPR000504 GO:0003723
Rops8g03518 143 SUPERFAMILY RNA-binding domain, RBD 34 126 IPR035979 GO:0003676
Rops8g03518 143 MobiDBLite consensus disorder prediction 119 143 - -
Rops8g03518 143 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Rops8g03518 143 Gene3D - 30 141 IPR012677 -
Rops8g03518 143 SMART rrm1_1 36 109 IPR000504 GO:0003723
Rops8g03518 143 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 32 123 - -
Rops8g03518 143 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03518 Rops-Chr8 74777467 74778596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03518 37 125 Eukaryotic Initiation Factors Gene Family AT2G23350 29.213 1.39e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03518 - - lja:Lj1g3v4721740.1 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03518 8 74777467 74778596 Rops8g03518 8 74777467 74778596 ECH