Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03511 ATGGAAAATATGCCACCAGGTTATCGTTTCTACCCTACAGAAGAAGAACTGATTACATTCTATCTTCACAATAAGCTTGAAGGAGAGAGGGAGGACATGAATCGGGTTATTCCAGTAGTTAATATCTATGACTACCACCCATCACAACTCCCTCAAATTTGTGGAGAGGTGAGTCAAAGAGACCCAGAGCAATGGTTCTTTTTCATTCCGAGGCAAGAAAGTGAAGTCCGAGGAGGGAGACCAAAGCGTCTCACAGATACTGGGTACTGGAAGGCTACTGGCACTCCTAATCATGTTTATTCTTCTGATAATCGCATCATAGGCATGAAAAGGACTATGGTTTTCTACAACGGAAGAGCTCCTAATGGAAAGAAAACCGATTGGAAGATGAATGAATATAAGGCCATCAAAGGTGGAGCATCTTCTTCAAATAAGGAAGGTCCAATCTTAAGGCAGGAATTCAGTTTATGCCGAGTGTACATGAAATCAAAGTGCTTGCGAGCATTTGATAGACGACCACCTCCAAGGAGAGACACAGGTAGCTATCCTCTTATTCAAAATGCACAAGAGCATCATAAGGGTTCAACATCATATGATAATCATAACCCTCTTCCAATGGGGGAGAGAAGTGTAATAAGCTCACCAGAGAGCTGTTCCTCACACGATGGAGAAGCTGGCCAAATGGACGTTGACAATGAGCCTTTGTTGGACTGGGAGCAAGTGGATTGGTTCTTGGCATCGGAACCATGA 750 0.4347 MENMPPGYRFYPTEEELITFYLHNKLEGEREDMNRVIPVVNIYDYHPSQLPQICGEVSQRDPEQWFFFIPRQESEVRGGRPKRLTDTGYWKATGTPNHVYSSDNRIIGMKRTMVFYNGRAPNGKKTDWKMNEYKAIKGGASSSNKEGPILRQEFSLCRVYMKSKCLRAFDRRPPPRRDTGSYPLIQNAQEHHKGSTSYDNHNPLPMGERSVISSPESCSSHDGEAGQMDVDNEPLLDWEQVDWFLASEP* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03511 249 MobiDBLite consensus disorder prediction 188 234 - -
Rops8g03511 249 Gene3D NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
Rops8g03511 249 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Rops8g03511 249 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 192 - -
Rops8g03511 249 MobiDBLite consensus disorder prediction 188 203 - -
Rops8g03511 249 SUPERFAMILY NAC domain 2 162 IPR036093 GO:0003677|GO:0006355
Rops8g03511 249 ProSiteProfiles NAC domain profile. 4 162 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03511 Rops-Chr8 74665126 74667135 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03511 7 243 NAC Transcription Factor Family AT5G22380 49.160 4.16e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops8g03511 NAM 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03511 - - gmx:100777948 372.859