Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03507 ATGGAAAATATGCCACCAGGTTATCGTTTCTACCCTACAGAAGAAGAACTGATTACATTCTATCTTCACAATAAGCTTGAAGGAGAGAGGGAGGACATGGATCGGGTTATTCCAGTAGTTAATATCTATGACTACCACCCATCACAACTCCCTCAAATTTGTGGAGAGGTGAGTCAAAGAGACCCAGAGCAATGGTTCTTTTTCATTCCGAGGCAAGAAAGTGAAGCCCGAGGAGGGAGACCAAAGCGTCTCACAGATACTGGGTACTGGAAGGCTACTGGCACTCCTAATCATGTTTATTCTTCTGATAATCGCATCATAGGCATGAAAAGGACTATGGTTTTCTACAACGGAAGAGCTCCAAATGGAAAGAAAACCGATTGGAAGATGAATGAATATAAGGCCATCAATGGTGGAGCATCTTCTTCAAATAAGGAAGGTCCAATGGTCTCTAGTCTCTTCAGTCGAGTAAACTATCAATTTAGTCCCAATAATGACACCAAATTTCACTTGTTCCTTCGTAGAAGAAAACTCAATCAAAAGTCCTTGAAATTGTCAAATGTTGATCAAGTTAGTCTCTTCATCTAA 588 0.4065 MENMPPGYRFYPTEEELITFYLHNKLEGEREDMDRVIPVVNIYDYHPSQLPQICGEVSQRDPEQWFFFIPRQESEARGGRPKRLTDTGYWKATGTPNHVYSSDNRIIGMKRTMVFYNGRAPNGKKTDWKMNEYKAINGGASSSNKEGPMVSSLFSRVNYQFSPNNDTKFHLFLRRRKLNQKSLKLSNVDQVSLFI* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03507 195 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 167 - -
Rops8g03507 195 SUPERFAMILY NAC domain 2 140 IPR036093 GO:0003677|GO:0006355
Rops8g03507 195 ProSiteProfiles NAC domain profile. 4 156 IPR003441 GO:0003677|GO:0006355
Rops8g03507 195 Gene3D NAC domain 13 160 IPR036093 GO:0003677|GO:0006355
Rops8g03507 195 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03507 Rops-Chr8 74613296 74614557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03507 7 144 NAC Transcription Factor Family AT5G22380 59.712 1.37e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops8g03507 NAM 6.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03507 - - gmx:100777948 265.774