Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03492 ATGGTGTCTTGTTGGAGGCATCCACAGTTTCAGACAGTGATGCATAAAATGCCTGGGACAAGACAGAGAGATGAAACAGCCCAAAATCCAGAGTCTCCAGAGGGGAACAGCGAGCCTGAAAAACCCACAGATTCTGATGAGCAGGTAGACTTTGATGGCGACAATGATCAAGAGGATACAATGGAGGAAGAAGTTGAATATGAGGAAGTAGAGGAGGAGGAAGAAGTGGAAGAGGAAGAAGAGGAAGAGGAAGTGGAGGAGGAGGAAGAAGAAGAAGTAGAGGAAGAGACTAAACCCTCAGATGGAGAGGATGAGACTATGGATGAGGTTGAGAAAAAGAAACATGCTGAGCTTCTTGCGCTTCCACCTCATGGGTCGGAGGTCTACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATTTGAGGGTCTTTTGTCAATCTGTGGGAGAAGTGTCAGAGGTAAGGGTTATGAAGGGGAAAGAATCAGGTGAAGCAAGAGGTTATGCTTTTGTAACCTTCAAGACAAAAGAATTGGCATCTAAGGCTATTGAGGAGCTGAACAACTCTGAATTTAAGGGGAAAAAAATAAAGTGCTCGACATCTCAAGTTAAGCATAAGTTGTTCGTTGGTAATGTTCCTAAAAATTGGACTGTAGAAGATATGAAGAAGGTTGTTGCAAAGGTTGGCCCTGGAGTCATTTCTGTGGAACTGTTGAAGGATCCACAGAGTGCTGGCCGTAATCGGGGATTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACTCAAATTTTAAACTTGACAATAATGCTCCAACAGTAAGCTGGGCTGACCCAAGGAATTCTGAATCATCTGCAGCCTCCCAGGTAAAAGCAGTATATGTGAAAAACCTTCCAGAAAACATTACTCAGGACCATCTTAAAGAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGTTCTCCCTCCTGCTAAAGCTGGACAAGAAAAGAGCAGATTTGGTTTTGTGCACTTTTCTGATAGGTCAAGTGCCATGAAGGCATTGAAGAATACGGAGAAATATGAAATTGATGGCCAAACTTTGGAGTGTTCACTTGCTAAGCCACAGGCAGATCAGAGGCCATCCAGTGCTTCAAATTCACAGAAGTCGGTAGTACTTCCCACTTATCCACCTCGTCTTGGTTATGGCATGGTTGGAGGTGCATATGGTGCTATTGGTGCAGGATATGGTGCTGCTGGCTTTGCACAACCACTTATGTATGGTACGGGAGCAACCCCTCCTGGCATGGCAATGATGCCAATGCTTTTACCAGATGGAAGGATTGGATATGTTCTGCAACAGCCAGGTTTGCAACAGCCTACTCCTTCACCAGCATCCCGACATGGCAGGAATGGCGGTGGTAGCTCAAGTGGTGGGAAACGCAGTAATGATAATAACCGTAATCGTGGGCATGGCCGATATAATCCCTACTAA 1503 0.4451 MVSCWRHPQFQTVMHKMPGTRQRDETAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEDTMEEEVEYEEVEEEEEVEEEEEEEEVEEEEEEEVEEETKPSDGEDETMDEVEKKKHAELLALPPHGSEVYIGGIPQKVSEEDLRVFCQSVGEVSEVRVMKGKESGEARGYAFVTFKTKELASKAIEELNNSEFKGKKIKCSTSQVKHKLFVGNVPKNWTVEDMKKVVAKVGPGVISVELLKDPQSAGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLDNNAPTVSWADPRNSESSAASQVKAVYVKNLPENITQDHLKELFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGQTLECSLAKPQADQRPSSASNSQKSVVLPTYPPRLGYGMVGGAYGAIGAGYGAAGFAQPLMYGTGATPPGMAMMPMLLPDGRIGYVLQQPGLQQPTPSPASRHGRNGGGSSSGGKRSNDNNRNRGHGRYNPY* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03492 500 SMART rrm2_1 301 374 IPR003954 GO:0003676
Rops8g03492 500 SMART rrm2_1 127 200 IPR003954 GO:0003676
Rops8g03492 500 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 207 287 - -
Rops8g03492 500 CDD RRM_SF 128 200 - -
Rops8g03492 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 378 IPR000504 GO:0003723
Rops8g03492 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 275 IPR000504 GO:0003723
Rops8g03492 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 371 IPR000504 GO:0003723
Rops8g03492 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 198 IPR000504 GO:0003723
Rops8g03492 500 MobiDBLite consensus disorder prediction 49 104 - -
Rops8g03492 500 MobiDBLite consensus disorder prediction 457 486 - -
Rops8g03492 500 SUPERFAMILY RNA-binding domain, RBD 123 291 IPR035979 GO:0003676
Rops8g03492 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 288 IPR000504 GO:0003723
Rops8g03492 500 MobiDBLite consensus disorder prediction 1 110 - -
Rops8g03492 500 Gene3D - 47 206 IPR012677 -
Rops8g03492 500 Coils Coil 60 98 - -
Rops8g03492 500 Gene3D - 289 413 IPR012677 -
Rops8g03492 500 SMART rrm1_1 207 284 IPR000504 GO:0003723
Rops8g03492 500 SMART rrm1_1 127 200 IPR000504 GO:0003723
Rops8g03492 500 SMART rrm1_1 301 374 IPR000504 GO:0003723
Rops8g03492 500 MobiDBLite consensus disorder prediction 377 396 - -
Rops8g03492 500 SUPERFAMILY RNA-binding domain, RBD 297 387 IPR035979 GO:0003676
Rops8g03492 500 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 289 398 - -
Rops8g03492 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 204 IPR000504 GO:0003723
Rops8g03492 500 Gene3D - 207 287 IPR012677 -
Rops8g03492 500 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 26 492 - -
Rops8g03492 500 MobiDBLite consensus disorder prediction 457 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03492 Rops-Chr8 74359702 74368465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03492 128 500 Eukaryotic Initiation Factors Gene Family AT2G23350 25.307 1.64e-21 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03492 K13161 - gmx:100798476 686.411