Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03482 ATGGAGAGGTTGGAGTTGAAGGAGGTTCAGAGACTGGAAGGTCACAACGATAGGGTTTGGAGTTTGGATTGGAACCCGGCAACCGGTCATCCCGGTATCCCTCTTGTCTTCGCTTCTTGCAGCGGCGACAAAACCGTTCGAATCTGGGAACAGAACCTCTCTTCTGGTCTCTGGTCCTGCAAGGCGGTTTTGGAAGAAACACACACTCGAACTGTTCGATCTTGTGCCTGGTCACCATCCGGGAAACTGTTGGCCACTGCAAGCTTTGATGCCACCACTGCCATTTGGGAAAATGTTGGGGGTGACTTTGAGTGTGTCTCTACTTTAGAGGGACATGAAAATGAAGTAAAGAGTGTATCTTGGAATGCATCTGGAACTTTGCTTGCAACTTGTAGTAGAGATAAATCTGTTTGGATATGGGAAATGCAGCCTGGCAATGAGTTTGAGTGTGTGTCAGTGCTGCAAGGACATACCCAGGATGTGAAAATGGTGAAGTGGCACCCTACGGAGGATATCTTAGTCTCATGTAGCTATGATAATACTGTTAAGGTTTGGGCAGATGAAGGTGACTGTGACGATTGGCAGTGTGTTCAAACTCTTGGAGAACCCAACAATGGTCATACTTCTACTGTTTGGGCCCTCTCATTCAATGCAAGTGGAGACAAAATGGTTACCTGTAGTGATGATCTTACCCTGAAGGTATGGGAAACAGAAAACACAGGGATGCAATCTGGTGGTGGATTTCCGCCTTGGAGACATCTTTGCACTCTTACAGGGTATCATGATCGGACAATTTTCTCAGTTCATTGGTCAAGAGAAGGTATCTTTGCCAGTGGAGCCGCAGATGACACTATACAGCTTTTTGTGGATAACAATGAAAGTCAGGTTGGTGGTCCTCTGTACAAGTTGCTGCTGAAGAAGGAGAAGGCCCATGACATGGACATAAATTCTGTGCAGTGGAGCCCTGGGGAGAAGCCGCTACTAGCCTCTGCAAGCGATGATGGGACAATCAAGGTGTGGGAGCTGGTATCACAGTGTTGA 1041 0.4736 MERLELKEVQRLEGHNDRVWSLDWNPATGHPGIPLVFASCSGDKTVRIWEQNLSSGLWSCKAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNASGTLLATCSRDKSVWIWEMQPGNEFECVSVLQGHTQDVKMVKWHPTEDILVSCSYDNTVKVWADEGDCDDWQCVQTLGEPNNGHTSTVWALSFNASGDKMVTCSDDLTLKVWETENTGMQSGGGFPPWRHLCTLTGYHDRTIFSVHWSREGIFASGAADDTIQLFVDNNESQVGGPLYKLLLKKEKAHDMDINSVQWSPGEKPLLASASDDGTIKVWELVSQC* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03482 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 346 IPR001680 GO:0005515
Rops8g03482 346 CDD WD40 8 341 - -
Rops8g03482 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 50 IPR001680 GO:0005515
Rops8g03482 346 SMART WD40_4 5 50 IPR001680 GO:0005515
Rops8g03482 346 SMART WD40_4 147 186 IPR001680 GO:0005515
Rops8g03482 346 SMART WD40_4 193 236 IPR001680 GO:0005515
Rops8g03482 346 SMART WD40_4 250 289 IPR001680 GO:0005515
Rops8g03482 346 SMART WD40_4 301 341 IPR001680 GO:0005515
Rops8g03482 346 SMART WD40_4 102 141 IPR001680 GO:0005515
Rops8g03482 346 SMART WD40_4 57 97 IPR001680 GO:0005515
Rops8g03482 346 FunFam Probable cytosolic iron-sulfur protein assembly protein CIAO1 4 346 - -
Rops8g03482 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 154 185 - -
Rops8g03482 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 239 - -
Rops8g03482 346 ProSitePatterns Trp-Asp (WD) repeats signature. 328 342 IPR019775 -
Rops8g03482 346 Gene3D - 35 345 IPR015943 GO:0005515
Rops8g03482 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 97 IPR001680 GO:0005515
Rops8g03482 346 PANTHER WD40 PROTEIN CIAO1 6 345 IPR028608 GO:0016226|GO:0097361
Rops8g03482 346 ProSitePatterns Trp-Asp (WD) repeats signature. 223 237 IPR019775 -
Rops8g03482 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 12 50 - -
Rops8g03482 346 ProSitePatterns Trp-Asp (WD) repeats signature. 128 142 IPR019775 -
Rops8g03482 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 239 IPR001680 GO:0005515
Rops8g03482 346 PRINTS G protein beta WD-40 repeat signature 173 187 IPR020472 -
Rops8g03482 346 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Rops8g03482 346 PRINTS G protein beta WD-40 repeat signature 37 51 IPR020472 -
Rops8g03482 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 154 185 IPR001680 GO:0005515
Rops8g03482 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 143 - -
Rops8g03482 346 SUPERFAMILY WD40 repeat-like 4 340 IPR036322 GO:0005515
Rops8g03482 346 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 4 344 IPR028608 GO:0016226|GO:0097361
Rops8g03482 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 65 97 - -
Rops8g03482 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 150 IPR001680 GO:0005515
Rops8g03482 346 Pfam WD domain, G-beta repeat 8 49 IPR001680 GO:0005515
Rops8g03482 346 Pfam WD domain, G-beta repeat 194 235 IPR001680 GO:0005515
Rops8g03482 346 Pfam WD domain, G-beta repeat 59 96 IPR001680 GO:0005515
Rops8g03482 346 Pfam WD domain, G-beta repeat 104 140 IPR001680 GO:0005515
Rops8g03482 346 Pfam WD domain, G-beta repeat 309 340 IPR001680 GO:0005515
Rops8g03482 346 Pfam WD domain, G-beta repeat 149 185 IPR001680 GO:0005515
Rops8g03482 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03482 Rops-Chr8 74258277 74269765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03482 80 344 U-box Gene Family AT2G33340 26.792 2.74e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03482 K24730 - gmx:100778826 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03482 8 74258277 74269765 Rops8g03482 8 74258277 74269765 ECH