Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03451 ATGGACTTCAATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTACTTCTCCCTGAATCCCATCAACAACAGCCACAATCATCTGCACCTGCTCTCCCTTTGTTTGTACCTGAACCCAACAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCTTCTAACAGATTTCCCAGGATGGGGAGTTATTTCAGCTCGTCTCAGTGGCAAGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTATCCATTCACCTCCTTATTTCCTTCATCACCCTCTCCAACATTATCAACCTGCTTTGTTGCAATCAGGGTACTGGGGAAGAGCAGCCATGGATCCAGAGCCGGGCCGTTGTCGGAGGACCGACGGGAAAAAGTGGCGGTGCTCGAGGGACGTGGTGGCTGGACAAAAATACTGTGAGCGCCACATGCATCGTGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCCGGTGGTGGATCTTTTGGTGCTTCATCCTCCATTCCTTCATCACCTCTGGCTACTGCCTCACTCAAATCTCCTTTCGATCTCCTTCACCTTAATGAACGTTCCTCTGGGACCAAGAATGAGGACAAGAGCTTGTTTGAAAGCCAAGATCATGTGGGTGGGGATGGCAGATCAGGTGGCCATATGCTGAGGCATTTCTTTGATGATTGGCCACGATCACTGCAAGAGTCTGACAACGCTGAAAACAATGCTGGCCGGATGAACTCGGCCACATGCCTCTCTATTTCAATGCCCGGAAATACTTCATCGGATGTGTCATTGAAATTGTCCACTGGCTCTGGGGAGGATCCGTGCCCAAGAAATGAGAATGTGGACCTAGAAGCGGAGCAGCTGCAGTTGAATTGGGCCGGAGGATGGACTTCAGCAAATCAGGTGGCTTCTATGGGAGGACCACTTGCAGAGGCACTGAGATCATCCACTTCAACTTCGTCACCCACTAGTGTTCTGCATCAATTGCCTCGTAGTTCTGGTTCCGAGACCAGCTTTATTAGCACCTAA 1125 0.4933 MDFNLKQWRNQHESEEQHSTKMPKLLLPESHQQQPQSSAPALPLFVPEPNSKVSTLSDSTLASNRFPRMGSYFSSSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLIHSPPYFLHHPLQHYQPALLQSGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSAGGGSFGASSSIPSSPLATASLKSPFDLLHLNERSSGTKNEDKSLFESQDHVGGDGRSGGHMLRHFFDDWPRSLQESDNAENNAGRMNSATCLSISMPGNTSSDVSLKLSTGSGEDPCPRNENVDLEAEQLQLNWAGGWTSANQVASMGGPLAEALRSSTSTSSPTSVLHQLPRSSGSETSFIST* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03451 374 ProSiteProfiles WRC domain profile. 140 184 IPR014977 -
Rops8g03451 374 SMART QLQ_2 71 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops8g03451 374 MobiDBLite consensus disorder prediction 1 22 - -
Rops8g03451 374 MobiDBLite consensus disorder prediction 343 374 - -
Rops8g03451 374 ProSiteProfiles QLQ domain profile. 72 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops8g03451 374 MobiDBLite consensus disorder prediction 342 374 - -
Rops8g03451 374 MobiDBLite consensus disorder prediction 225 239 - -
Rops8g03451 374 MobiDBLite consensus disorder prediction 26 40 - -
Rops8g03451 374 PANTHER GROWTH-REGULATING FACTOR 5 37 293 IPR031137 GO:0005634|GO:0006351|GO:0032502
Rops8g03451 374 MobiDBLite consensus disorder prediction 225 249 - -
Rops8g03451 374 Pfam WRC 141 183 IPR014977 -
Rops8g03451 374 MobiDBLite consensus disorder prediction 1 43 - -
Rops8g03451 374 MobiDBLite consensus disorder prediction 167 203 - -
Rops8g03451 374 Pfam QLQ 73 105 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03451 Rops-Chr8 73819928 73822394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03451 1 361 GRF Transcription Factor Family AT3G52910 52.196 3.67e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Rops8g03451 WRC 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03451 - - gmx:100814842 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03451 8 73819928 73822394 Rops8g03451 8 73819928 73822394 ECH