Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03446 ATGCGTTCCAGCAACGGTAATACTAGTTGTGCTTCAAGCAGCAAAGGCTCAACTGGGCGTCACCCTGTGTACCGTGGAGTGAGGCGTAGGAGTAGTGGCAAATGGGTATCTGAAATTAGAGAACCCAAGAAGCCTAATAGAATTTGGTTAGGGACATTCCCTACACCTGAAATGGCAGCTATTGCTTATGATGTTGCTGCCCTTGCTCTTAAGGGTAAGGATGCTGAACTTAACTTCCCTAACTCAGCTTCTTCTTTGCCTGTCCCTGCTTCTTCCTCTGCCCGTGATATTCAGATTGCTGCAGCTGGTGCTGCATCTGCTGTTGGAGCAGCCAATGATGCATTGACAGGTATTGAAGGAAGCCGAGAAGGGAATGTTTCAGTGCCACAAGAAGTTGCTGAAGGGTATGAGTTTGTGGATGAAGATTTGATCTTTGATATGCCAAATGTTCTGGTCAATATGGCTGAAGGAATGCTGCTAAGCCCTCCTCGTTTTGATATTGCTAGCGAGTATGCTGCCCCAGAAGACCCAAACCTGTGGGGTTTCCCTTATTTCCCATGA 561 0.4724 MRSSNGNTSCASSSKGSTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAIAYDVAALALKGKDAELNFPNSASSLPVPASSSARDIQIAAAGAASAVGAANDALTGIEGSREGNVSVPQEVAEGYEFVDEDLIFDMPNVLVNMAEGMLLSPPRFDIASEYAAPEDPNLWGFPYFP* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03446 186 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Rops8g03446 186 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Rops8g03446 186 MobiDBLite consensus disorder prediction 1 36 - -
Rops8g03446 186 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Rops8g03446 186 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Rops8g03446 186 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Rops8g03446 186 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Rops8g03446 186 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Rops8g03446 186 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 170 IPR045277 GO:0003700
Rops8g03446 186 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Rops8g03446 186 MobiDBLite consensus disorder prediction 1 19 - -
Rops8g03446 186 FunFam Ethylene-responsive transcription factor 2 22 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03446 Rops-Chr8 73695171 73696041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03446 13 183 AP2-EREBP Transcription Factor Family AT2G36450 57.838 1.83e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g03446 AP2 9.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03446 - - gmx:100813781 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03446 8 73695171 73696041 Rops8g03446 8 73695171 73696041 ECH
Rops8g03446 8 73695171 73696041 Rops6g00902 6 22307208 22307762 PCT
Rops6g00901 6 22260324 22260905 Rops8g03446 8 73695171 73696041 PCT