Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03445 ATGGAAATGGAGGATCATCATCATCATCATCACCATCATGAACAGCAACAACAGCAGTATGGTATCGCTGATCTTAGGCAGCTTGTGAATGGAGCACGGTCGACCCATTTCCCAACAATACCAACCCAACCCACAGCGGAGCTCTTCCCCGCCGGCCACCCGAATCTGACAGTGACAGCCACTCATCACCAACAACAACAACACTATGAGATGATGATGTTTGGTCGTCAAGTAGCAGATATAATGCCTCGTTGTCTTCATGACTTTGCTTCCACCGATTCTGGTGCTGCTGCAGCTACCAATACTGGTATCACTGTTGCCACTCCCACCACAAACAGTGCTTCAACTCCTCCACTTAGTGGCTTAGAGGCTGAGACTGTGGGTTGCATAGGAGGTGTTGATGCCTCCACTGGAAGATGGCCTAGACAGGAGACTCTTACTCTTCTTGAGATCAGATCTCATCTTGACCCTAAATTCAAAGAGGCTAATCAAAAGGGCCCCCTATGGGATGAAGTTTCTAGGATCATGTATGAAGAACATGGATATCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAACCTGTACAAATATTACAAGAAGACAAAGGAAGGAAAAGCAGGAAGACAAGATGGGAAGCACTACAGATTCTTCCGCCAACTTGAAGCCTTATATGGTGAAAACAGTAACCAAGCTTCAGTCCCAGAAACCAATTTTCGTTTCCAAACAAGCAGCCATGCCCCCTCTCAAACTAATCAAGAAATGTTTCAGTCTCAGAAGCATTGTGATAGCCTCAGCCTCACTAACTCCACTGAATTCGACACGTCATCTTCAGATGACAATGATCGTGACACTGAAGGACTCAAGGACAACGACTCCGTGGAGAAGAGGAGAAAGAGGATGAGTGGAAGAAGCTGGAAGGTTAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGCTGGTGGAGAAGCAAGAGCAATGGTTGGATAAACTCACCAAGACACTGGAGCAGAAGGAAAAGGAGAGGGTTTTGAGAGAGGAAGAGTGGAGGAGACAAGAGGCAGAAAGGTTGGAAAAGGAACACAAATTTTGGGCTAAAGAAAGGGCATGGATTGAAGCAAGGGATGCTGCTCTAATGGAGGCTTTGCAAAAATTAACAGGAAGTGAGATAAGGACTCAATCTCATGAGGGTCTAATGCCAGCTAGATTTCAAAACCACAGTGAAAACCAGAATGAAGATGGAAGTGAAATACTGAATAGCACAGCCAGAGGTGCTGAAAGCTGGCCAGAATCTGAGATTACAAGGCTTTTACAGTTGAGAGCTGAGATGGAGACAAGGTTTAGGGAAAGTGGGTGTTCAGAAGATGTTATGTGGGAGGAAATAGCAACCAAAATGGCTTGTTTTGGTTATGAAAGGTCTGCTTTGATGTTCAAAGAGAAATGGGAAAGTGTCAGCAACTGCTCAAGGAATGCCAAGGAGGGAAACAAGAAGCGCAAGGAAAACTCAAGAGGTTGTTTCTACTTCGATAACAATGACCAATCTTCTCTATATAATCAAGGAGGTGGTGCCTATTGTGATATCAACGACCAAAGACGAGAGAGACTACAAACAAATGATGGTTCTTCACCTTCAAATTCTAATGTGGGAAATGCAGTTGCTGCTGAGAGCTGCTTTCCCTTCTTGATGACTGAGGGAGGAAATTTGTGGGAGAACTACAGCTTAAAGGTAAATAAAGCAAACCAAAACCAATGA 1758 0.4448 MEMEDHHHHHHHHEQQQQQYGIADLRQLVNGARSTHFPTIPTQPTAELFPAGHPNLTVTATHHQQQQHYEMMMFGRQVADIMPRCLHDFASTDSGAAAATNTGITVATPTTNSASTPPLSGLEAETVGCIGGVDASTGRWPRQETLTLLEIRSHLDPKFKEANQKGPLWDEVSRIMYEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQASVPETNFRFQTSSHAPSQTNQEMFQSQKHCDSLSLTNSTEFDTSSSDDNDRDTEGLKDNDSVEKRRKRMSGRSWKVKIKDFIDSQMRKLVEKQEQWLDKLTKTLEQKEKERVLREEEWRRQEAERLEKEHKFWAKERAWIEARDAALMEALQKLTGSEIRTQSHEGLMPARFQNHSENQNEDGSEILNSTARGAESWPESEITRLLQLRAEMETRFRESGCSEDVMWEEIATKMACFGYERSALMFKEKWESVSNCSRNAKEGNKKRKENSRGCFYFDNNDQSSLYNQGGGAYCDINDQRRERLQTNDGSSPSNSNVGNAVAAESCFPFLMTEGGNLWENYSLKVNKANQNQ* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03445 585 MobiDBLite consensus disorder prediction 1 20 - -
Rops8g03445 585 MobiDBLite consensus disorder prediction 277 300 - -
Rops8g03445 585 MobiDBLite consensus disorder prediction 1 17 - -
Rops8g03445 585 MobiDBLite consensus disorder prediction 269 302 - -
Rops8g03445 585 Gene3D - 140 202 - -
Rops8g03445 585 Gene3D - 430 491 - -
Rops8g03445 585 FunFam trihelix transcription factor PTL-like 140 202 - -
Rops8g03445 585 FunFam Trihelix transcription factor GT-2 430 492 - -
Rops8g03445 585 Pfam Myb/SANT-like DNA-binding domain 429 514 IPR044822 -
Rops8g03445 585 Pfam Myb/SANT-like DNA-binding domain 139 225 IPR044822 -
Rops8g03445 585 CDD GT1 430 488 - -
Rops8g03445 585 Coils Coil 323 359 - -
Rops8g03445 585 SMART sant 426 489 IPR001005 -
Rops8g03445 585 SMART sant 136 199 IPR001005 -
Rops8g03445 585 ProSiteProfiles Myb-like domain profile. 132 197 IPR001005 -
Rops8g03445 585 CDD GT1 139 204 - -
Rops8g03445 585 PANTHER FI21293P1 87 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03445 Rops-Chr8 73652822 73656176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03445 14 580 Trihelix Transcription Factor Family AT5G03680 43.831 5.98e-145 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops8g03445 Myb_DNA-bind_4 2.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03445 - - gmx:100813245 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03445 8 73652822 73656176 Rops8g03445 8 73652822 73656176 ECH
Rops8g03445 8 73652822 73656176 Rops6g00903 6 22339562 22342552 PCT