Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03439 ATGGACATGGAGAGCACGCGTAGATCGTTGGATAGATCCAGAGAACCGGGTGCCAAAAAGCCCCGTTTGATCGATGGTTCGAACCCCAGTGCCCGACCGTTTCCTCAGCGACAACCTGTTTCTGGGGTGGGTACAACGTTGGCGTCTGCGAGGTTTAGAACAAATGACAGAGACTCCGAAAGCGGTGATTCGGGTCGCGGCGGCGGGTACCAGCCGCAACCACCGCCACACCAAGAGCTTGTGATTCAGTATAAGACCGCGCTTGCTGAGCTCACTTTCAACTCGAAGCCGATAATTACCAACTTGACAATAATTGCTGGAGAAAACCAATCTGCTGCCAAGGCAATTGCTGGGACTGTTTGTGCTAATATTCTAGAGGTTCCGACTGAACAAAAGCTGCCATCGCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGAGATTATATAAAATACTTTGCTGCCAGGCTACCCGAGGTATTCTGCAAGGCCTACAGACTAGTTGATCCTTCTCTTCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTCTTTCCCCCTCAGACCCTTCAGATAATTGAGAAGGAACTTGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCTGCCTCTGCTACACTCAGGAGTGATTCACAATCACAACGCCCACCTCATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCAAGACTAAAGGAGTAGTTAATGATATGACTGGAGCTATTTTAAACTCAAATGAAGACTCAGAGAGGCCAGATAGAGCTTCGGGTGCTGCACGACCATGGCTGGATCCTAGGCTTAACATGCATAATAATCAGCAGAGTCAGAGAGACGCACTTAACAATTCTGTTCCTGAAAAGAATATTGGTGGATCCTATGGAGGTGATGAATATAGTTCTGGTATATCAAATAATTTGGGCTCAGGATTTGGAAGAACCGGAAATAGGCCCATTGGTGGTGTTGCAGAGACCTTATCCGGGCAAAGAAATGGTTTCAGTCATAAGCGTAGTTTTTCGAATCATGAAGCACCAAAATCCATGAATTTGGATGCACATCGTCAGCCAACACAAACAATGACTAACATAAAGAGCAGTGTAATGTCAAGTAACTGGAAAAATTCTGAGGAAGAGGAGTTCATGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCCAATGTCTCTAGTAACTTGAGCACAGACCCATGGATGCCCGATGATGAAAATTTGGAAGGTGAAGATCACCTCCAAATCCCACACCCTTTTGGGGCAAAGGTTGACAGAGAAATATCCACCGTTAAGAAACAACTACCTGCATTTGGGGGGCATTCATCATTATCATGGCAAATGCAAAAGCAGCACTCAAGTGATATTAGTGGCTTACCCGGAAATACAAATTCTTCTGCTGTCAGGCCAAGAAATCAGTCCTTTATGCCAAATGCAACAATAGGAATGACCAAAATTATGGGACAACAGCAATTTGATTCCGGGGGAGCCAAATCCCCTTCTGGACAGTCACCTTTGCATCACGTGCAGGGTCCATTATCTTCTGTAACTTCTTTTCAGCCAAGGCTTCAGCAACAGCAGCTAGGCCCTTCTCATCCGGGAGTTACCCTTAAAACCAAGAAGCCACCCCAGTCTAAAGTTTCTTTAGCCAGAGAAACTTCAGAAAAGTTAACCACAAATAGTCTTTCAGTTGCATCTATGAAGAGTGGAGTCATCCCCAACAAATCAATTACCAGTAGTCTTCCTACTACAAGTAGTCTAGATGCACGGAATCTTCCATCTCAAGCAGGGGTTCGGCCTACTCGGTCAGGTGGTCCTTCCCCTACCACATTAATTTCTTCAGGGTCTGCAGCCGTATCACTATCTTCAGCAAGTCCTCTAAATGATTATTCTTCTATTCTGCCAAAAATACCTCAAGGAAAGGCTGGACCACCACAAAGGGATTCTATTCAACCACCTGCTTCCTCTAATGTGAGCAGTGCCTCGGCTCCAAGCTCAAATGCCACCAATAAGAATACCTTAAATCCAATTGCAAACCTTTTAAGCTCATTAGTTGCAAAAGGTTTGATATCTGCAGAAACTGAGTCAGCAACTATAGCGCCAAGTGAGATGCTGACACAATCAGAAGACCAAACTGAAAGCATTACTACCAGTTGCTCCTTGCCAATTGCTTCGGTTCCTGGTTCTGCAGCTGTCCCAGTACCATCTTCCAGAGATGAGGTAGATGCTGCTGCTAAAGCCTCTCTTGCTTTGTCTCGATCAACTAGCCCAGAAATAAAAGATCTCATTGGCTTTGAGTTTAAACCTGATGTAATTCGAGAAATGCATCCAGATGTAATCAGGGGATTATTGGATGATCTTCCACATCCTTGCACAATTTGCGGTATTAAGTTTAAACAGCAAGAACAGTTTAATAGACACTTGGAATGGCATGCCACAAGAGAACAAAATGGTCTAGTTAGGGCATCAAGAAGATGGTATGCAAAGTCAGATGATTGGATTGCTGGCAAGACTGAGTTTGAGTTTACTGATTCAGTAGATGTATATAACAAAAATACAGACGGGAGTCAAGTGGATACTATGGTTCCAGCAGATGAAAACCAGTGCTTGTGTGTCTTGTGTGGCGAGCTGTTTGAAGATGTTTACTGTCAGGAAAGGGATCAATGGATGTTCAAAGGGGCTGTTTACATGAACAACTCAGATAACAACAGTGATATGGATAGTAGAAATGTGGGCCCCATCATTCATGCTAGATGCTTATCAGAGAACTCGATATCCAGTGTCACCAAAACAGAACATGATTAA 2862 0.443 MDMESTRRSLDRSREPGAKKPRLIDGSNPSARPFPQRQPVSGVGTTLASARFRTNDRDSESGDSGRGGGYQPQPPPHQELVIQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIAGTVCANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRLVDPSLHSSMRHLFGTWRGVFPPQTLQIIEKELGFTPAVNGSASASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSKTKGVVNDMTGAILNSNEDSERPDRASGAARPWLDPRLNMHNNQQSQRDALNNSVPEKNIGGSYGGDEYSSGISNNLGSGFGRTGNRPIGGVAETLSGQRNGFSHKRSFSNHEAPKSMNLDAHRQPTQTMTNIKSSVMSSNWKNSEEEEFMWDEMNSGLTDHGPNVSSNLSTDPWMPDDENLEGEDHLQIPHPFGAKVDREISTVKKQLPAFGGHSSLSWQMQKQHSSDISGLPGNTNSSAVRPRNQSFMPNATIGMTKIMGQQQFDSGGAKSPSGQSPLHHVQGPLSSVTSFQPRLQQQQLGPSHPGVTLKTKKPPQSKVSLARETSEKLTTNSLSVASMKSGVIPNKSITSSLPTTSSLDARNLPSQAGVRPTRSGGPSPTTLISSGSAAVSLSSASPLNDYSSILPKIPQGKAGPPQRDSIQPPASSNVSSASAPSSNATNKNTLNPIANLLSSLVAKGLISAETESATIAPSEMLTQSEDQTESITTSCSLPIASVPGSAAVPVPSSRDEVDAAAKASLALSRSTSPEIKDLIGFEFKPDVIREMHPDVIRGLLDDLPHPCTICGIKFKQQEQFNRHLEWHATREQNGLVRASRRWYAKSDDWIAGKTEFEFTDSVDVYNKNTDGSQVDTMVPADENQCLCVLCGELFEDVYCQERDQWMFKGAVYMNNSDNNSDMDSRNVGPIIHARCLSENSISSVTKTEHD* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03439 953 MobiDBLite consensus disorder prediction 510 552 - -
Rops8g03439 953 CDD CID_Pcf11 81 193 IPR047415 -
Rops8g03439 953 SMART 558neu5 79 201 IPR006569 -
Rops8g03439 953 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 35 944 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Rops8g03439 953 ProSiteProfiles CID domain profile. 76 204 IPR006569 -
Rops8g03439 953 MobiDBLite consensus disorder prediction 313 327 - -
Rops8g03439 953 MobiDBLite consensus disorder prediction 31 52 - -
Rops8g03439 953 ProSitePatterns Zinc finger C2H2 type domain signature. 810 830 IPR013087 -
Rops8g03439 953 MobiDBLite consensus disorder prediction 560 575 - -
Rops8g03439 953 MobiDBLite consensus disorder prediction 1 77 - -
Rops8g03439 953 FunFam polyadenylation and cleavage factor homolog 4 73 201 - -
Rops8g03439 953 MobiDBLite consensus disorder prediction 237 262 - -
Rops8g03439 953 MobiDBLite consensus disorder prediction 651 691 - -
Rops8g03439 953 MobiDBLite consensus disorder prediction 668 691 - -
Rops8g03439 953 MobiDBLite consensus disorder prediction 592 633 - -
Rops8g03439 953 MobiDBLite consensus disorder prediction 211 228 - -
Rops8g03439 953 MobiDBLite consensus disorder prediction 510 575 - -
Rops8g03439 953 Gene3D - 73 201 IPR008942 -
Rops8g03439 953 SUPERFAMILY ENTH/VHS domain 76 204 IPR008942 -
Rops8g03439 953 MobiDBLite consensus disorder prediction 462 492 - -
Rops8g03439 953 MobiDBLite consensus disorder prediction 1 21 - -
Rops8g03439 953 Pfam CID domain 86 194 IPR006569 -
Rops8g03439 953 ProSiteProfiles Zinc finger C2H2 type domain profile. 808 835 IPR013087 -
Rops8g03439 953 MobiDBLite consensus disorder prediction 283 304 - -
Rops8g03439 953 MobiDBLite consensus disorder prediction 211 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03439 Rops-Chr8 73580977 73587649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03439 770 941 C2H2 Transcription Factor Family AT4G04885 37.363 1.00e-34 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g03439 CID 9.3e-13 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03439 K14400 - gmx:100811629 1202.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03439 8 73580977 73587649 Rops8g03439 8 73580977 73587649 ECH