Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops8g03432 | ATGGAGTTTTGGGGTGTTGAGGTAAAAAGTGGAGAATCTCTCAAGGTTGATCCGGGAGATGACAAGATTGTCCACCTTTCAATGGCATGTCTGGGGGAGGTCAATAAGGATAAAGGGAGTGAACCAGTATCTGTGTATGTGAAGCTCGGTGACCAGAAGCTTGTACTTGGAACACTTTCTTCTGAGAAATTCCCTCAGATATCATATGATTTGATATTTGAGAAGGAATTCGAGCTATCCCATACCTGGAAAAATGGGAATTCTGATGATTTCGATGGTGAAGATATTCCAGTTATTGCTGCCAATGGGAAACCTGAGATTGAGGTGAAGAACAGTGTCAAACCTGATGCAAATGAAGCTAAACAAAAGGAGAAGATACTGGATCCAAGAAAGAATGAGAAGGATAATAAAAAGAATGCAAATGCTGAAGATGAAGATTCATCTGAATCTGACTCTGATGAGGATTCCGGTGAAGATGAGCCCATGGTGAATGGTGAGATAGAAAGCAGTGAAGATGACGATGATAGCGATGAGGATGAGGATGATGATGATTCTGATGATGAGGAGACACCCAAGAAGACTGACGGCAACAATAAGAGGGTTCTTGAATCTTCCAAGAAAACACCTTTGCCTGTGAAGAAGGCGAAATTTGTGACTCCTCAGAAGACTGATGGCAAGAATGGTGGCCATGTTGCAACTCCTTATCCTTCTAAGCAGGCTGGAAAAGCAGCTGTAAATAACAAGCAACCAGCGAAGCAGCAGACTCCAAAGTCAGGTGGAGATTACGGCTGCAAACCTTGCAACAGGTCATTTAAGACAGAAGATGCCTTGAATTCTCATAATAAGGCCAAGCATAGTGCGAAATGA | 867 | 0.4268 | MEFWGVEVKSGESLKVDPGDDKIVHLSMACLGEVNKDKGSEPVSVYVKLGDQKLVLGTLSSEKFPQISYDLIFEKEFELSHTWKNGNSDDFDGEDIPVIAANGKPEIEVKNSVKPDANEAKQKEKILDPRKNEKDNKKNANAEDEDSSESDSDEDSGEDEPMVNGEIESSEDDDDSDEDEDDDDSDDEETPKKTDGNNKRVLESSKKTPLPVKKAKFVTPQKTDGKNGGHVATPYPSKQAGKAAVNNKQPAKQQTPKSGGDYGCKPCNRSFKTEDALNSHNKAKHSAK* | 289 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops8g03432 | 288 | MobiDBLite | consensus disorder prediction | 190 | 210 | - | - | |
Rops8g03432 | 288 | Gene3D | Nucleoplasmin core domain | 1 | 90 | - | - | |
Rops8g03432 | 288 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 262 | 288 | IPR013087 | - | |
Rops8g03432 | 288 | MobiDBLite | consensus disorder prediction | 240 | 256 | - | - | |
Rops8g03432 | 288 | MobiDBLite | consensus disorder prediction | 109 | 145 | - | - | |
Rops8g03432 | 288 | FunFam | Histone deacetylase HDT1 | 1 | 89 | - | - | |
Rops8g03432 | 288 | MobiDBLite | consensus disorder prediction | 83 | 288 | - | - | |
Rops8g03432 | 288 | MobiDBLite | consensus disorder prediction | 146 | 189 | - | - | |
Rops8g03432 | 288 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 264 | 285 | IPR013087 | - | |
Rops8g03432 | 288 | Pfam | Nucleoplasmin-like domain | 3 | 84 | IPR041232 | - | |
Rops8g03432 | 288 | Pfam | C2H2-type zinc finger | 262 | 286 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops8g03432 | Rops-Chr8 | 73464566 | 73468562 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops8g03432 | 1 | 281 | C2H2 Transcription Factor Family | AT3G44750 | 36.749 | 7.74e-39 | 135 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Rops8g03432 | NPL | 5.9e-11 | CL0055 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops8g03432 | - | - | ccaj:109796568 | 378.252 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops8g03432 | 8 | 73464566 | 73468562 | Rops8g03432 | 8 | 73464566 | 73468562 | ECH |