Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03432 ATGGAGTTTTGGGGTGTTGAGGTAAAAAGTGGAGAATCTCTCAAGGTTGATCCGGGAGATGACAAGATTGTCCACCTTTCAATGGCATGTCTGGGGGAGGTCAATAAGGATAAAGGGAGTGAACCAGTATCTGTGTATGTGAAGCTCGGTGACCAGAAGCTTGTACTTGGAACACTTTCTTCTGAGAAATTCCCTCAGATATCATATGATTTGATATTTGAGAAGGAATTCGAGCTATCCCATACCTGGAAAAATGGGAATTCTGATGATTTCGATGGTGAAGATATTCCAGTTATTGCTGCCAATGGGAAACCTGAGATTGAGGTGAAGAACAGTGTCAAACCTGATGCAAATGAAGCTAAACAAAAGGAGAAGATACTGGATCCAAGAAAGAATGAGAAGGATAATAAAAAGAATGCAAATGCTGAAGATGAAGATTCATCTGAATCTGACTCTGATGAGGATTCCGGTGAAGATGAGCCCATGGTGAATGGTGAGATAGAAAGCAGTGAAGATGACGATGATAGCGATGAGGATGAGGATGATGATGATTCTGATGATGAGGAGACACCCAAGAAGACTGACGGCAACAATAAGAGGGTTCTTGAATCTTCCAAGAAAACACCTTTGCCTGTGAAGAAGGCGAAATTTGTGACTCCTCAGAAGACTGATGGCAAGAATGGTGGCCATGTTGCAACTCCTTATCCTTCTAAGCAGGCTGGAAAAGCAGCTGTAAATAACAAGCAACCAGCGAAGCAGCAGACTCCAAAGTCAGGTGGAGATTACGGCTGCAAACCTTGCAACAGGTCATTTAAGACAGAAGATGCCTTGAATTCTCATAATAAGGCCAAGCATAGTGCGAAATGA 867 0.4268 MEFWGVEVKSGESLKVDPGDDKIVHLSMACLGEVNKDKGSEPVSVYVKLGDQKLVLGTLSSEKFPQISYDLIFEKEFELSHTWKNGNSDDFDGEDIPVIAANGKPEIEVKNSVKPDANEAKQKEKILDPRKNEKDNKKNANAEDEDSSESDSDEDSGEDEPMVNGEIESSEDDDDSDEDEDDDDSDDEETPKKTDGNNKRVLESSKKTPLPVKKAKFVTPQKTDGKNGGHVATPYPSKQAGKAAVNNKQPAKQQTPKSGGDYGCKPCNRSFKTEDALNSHNKAKHSAK* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03432 288 MobiDBLite consensus disorder prediction 190 210 - -
Rops8g03432 288 Gene3D Nucleoplasmin core domain 1 90 - -
Rops8g03432 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 288 IPR013087 -
Rops8g03432 288 MobiDBLite consensus disorder prediction 240 256 - -
Rops8g03432 288 MobiDBLite consensus disorder prediction 109 145 - -
Rops8g03432 288 FunFam Histone deacetylase HDT1 1 89 - -
Rops8g03432 288 MobiDBLite consensus disorder prediction 83 288 - -
Rops8g03432 288 MobiDBLite consensus disorder prediction 146 189 - -
Rops8g03432 288 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Rops8g03432 288 Pfam Nucleoplasmin-like domain 3 84 IPR041232 -
Rops8g03432 288 Pfam C2H2-type zinc finger 262 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03432 Rops-Chr8 73464566 73468562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03432 1 281 C2H2 Transcription Factor Family AT3G44750 36.749 7.74e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g03432 NPL 5.9e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03432 - - ccaj:109796568 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03432 8 73464566 73468562 Rops8g03432 8 73464566 73468562 ECH