Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03420 ATGGAACCCAATGGATTAGGTGGTGGAATATTTCCTAGCACCAGTAGTGGATTGCTAGGAGTAGAAAACCCTTTAAAACAACAACAGCCAAACCTCCAAAATCAGCAAAATCCCCACACTTTGCATCATTCCCAAATGGTTTCCTATGCAACCACCCACCATGACACTGACACCATTATTCCACAACCCCAGCAAACAATGAAACATGGGTATCCCCACCATTATTCAGCCAAGAACAACAAGCCACAAACGACCCTCAGTGATGAAGATGAGCCAGGGTTCACAGCAGAGGACAGCTCAGGGGACCCCAAGAGGAAAGTGTCACCATGGCATAGAATGAAGTGGACTGATACCATGGTTAGGCTCTTAATAATGGCTGTTTATTACATTGGAGATGAAGCTGGTTCTGAAGGGACTGATAAGAAGAAAGCCACGGGTTTGATGCAGAAGAAAGGGAAATGGAAATCAGTGTCAAGGGGCATGATGGAAAAGGGGTACTATGTGTCTCCTCAGCAATGTGAAGACAAGTTCAATGATTTGAACAAAAGGTACAAGAGAGTCAACGATATTCTAGGCAAGGGAACAGCTTGCAGGGTCGTGGAAAATCAAACTTTGATGGATACGATGGATTTGTCACCAAAGATGAGAGAAGAAGCTAGAAAATTGCTCAACTCAAAGCACCTTTTCTTCAGAGAAATGTGTGCTTACCATAACAGTTGTGGTCATGGTGGCACTTCCAACATGCAACAATCCACAGAGGCAGGAACTGAGGCTCATGCACAACAGCAACAGCAACAACAGCAAAGATGTTTCCATTCATCAGAAAACGGGGTGGGGAGTTTGAGAATATTGAAAGGGAGAAGCTTGGAAGAGGAAGAAGAAGAGGACGTTGATGATGATGAGTGGGAGGACACTTCTGAAGAGGAAGAAGATGATTCAGGTGAAGGTGGCTCAAAGGGTCATGCAGATGAGGATGAGAATGATGTGAGGAAGAGATCAAGGAAGGTGATGCAACAGTTGAGTGGTGAGGTGATGGGTGTGTTGCAAGATGGAGGTAAGAGTCCTTGGGAGAAAAAGCAGTGGATGAAGAAGAGGGTGGTGATGTTGGAGGAGGAGCATATAAGTTATCAAGTGGAAGCATTTGAGTTGGAAAAGCAGCGTTTGAAATGGGCAAGGTTTAGCAGCAAGAAGGGGAGGGAAATGGAGAGACACAAACTTGAAAATGAAGGGAGGAGGCTAGAAATTGATCGAATGGTTTTACTACTTCGCCAGAAGGAGCTTGAATTGTTGAATATTCAGCAGCAGCACCAACACTCTCCTACCTAG 1326 0.4487 MEPNGLGGGIFPSTSSGLLGVENPLKQQQPNLQNQQNPHTLHHSQMVSYATTHHDTDTIIPQPQQTMKHGYPHHYSAKNNKPQTTLSDEDEPGFTAEDSSGDPKRKVSPWHRMKWTDTMVRLLIMAVYYIGDEAGSEGTDKKKATGLMQKKGKWKSVSRGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQTLMDTMDLSPKMREEARKLLNSKHLFFREMCAYHNSCGHGGTSNMQQSTEAGTEAHAQQQQQQQQRCFHSSENGVGSLRILKGRSLEEEEEEDVDDDEWEDTSEEEEDDSGEGGSKGHADEDENDVRKRSRKVMQQLSGEVMGVLQDGGKSPWEKKQWMKKRVVMLEEEHISYQVEAFELEKQRLKWARFSSKKGREMERHKLENEGRRLEIDRMVLLLRQKELELLNIQQQHQHSPT* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03420 441 MobiDBLite consensus disorder prediction 244 275 - -
Rops8g03420 441 Pfam Myb/SANT-like DNA-binding domain 112 235 IPR044822 -
Rops8g03420 441 MobiDBLite consensus disorder prediction 314 331 - -
Rops8g03420 441 MobiDBLite consensus disorder prediction 16 38 - -
Rops8g03420 441 MobiDBLite consensus disorder prediction 1 38 - -
Rops8g03420 441 Gene3D - 115 186 - -
Rops8g03420 441 MobiDBLite consensus disorder prediction 291 313 - -
Rops8g03420 441 MobiDBLite consensus disorder prediction 60 107 - -
Rops8g03420 441 MobiDBLite consensus disorder prediction 244 331 - -
Rops8g03420 441 PANTHER F16F4.11 PROTEIN-RELATED 1 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03420 Rops-Chr8 73270747 73272072 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops8g03420 Myb_DNA-bind_4 1.3e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03420 - - gmx:100808934 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03420 8 73270747 73272072 Rops8g03420 8 73270747 73272072 ECH
Rops8g03420 8 73270747 73272072 Rops6g00930 6 22703429 22704862 PCT