Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03418 ATGGATTGGAATGAGAGCACAAGACCCTTTGTTCCACAGGCAGAGTCCTCCTTAAGCTTCTTCTACAACTATAACAACAACCCATATTCAGGAATGGAAGTGAAACAAGCGGCATTGGCAGAGACACCACAAAGGTTGCTTCCAACAATGGACAAAATGAACAGTGGAAGCCGGGAGAAGAAGAAGAGATTAACAAGTAACCAGATTGATTTATTGGAGAGGAGTTTCCAGGAGGAGATAAAGTTGGACCCTGAAAGGAAGATGAAGCTTTCAAGGGAGCTAGGACTCCAGCCTCGCCAAATTGCTGTTTGGTTCCAAAACAGACGTACAAGGTGGAAAGCCAAGCAGCTAGAGCACTTGTACGATGTGCTTAAACAGGAATTTGATGTCATCTCAAAGGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTGAAGGCAAGGCTAAGAAAGCAAGCTTTTAGGACACAAACATTTGGTTGTTACACAGAAATCTCAGGGGAAGAAACAGTAGAAAGCTCATCAGAGGCACTGCGTGATTCGAACAAGCCACGAGGAACGAGTAACATTCAGCAAGCTGGAGAGGGGTACTGTTCTTTCACTGTGGAGGATTATAACAGAGTTTCAATGCCTAACTGTCATTGGCCTGTGGTGTCTTATTACCCCTAA 669 0.441 MDWNESTRPFVPQAESSLSFFYNYNNNPYSGMEVKQAALAETPQRLLPTMDKMNSGSREKKKRLTSNQIDLLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDVLKQEFDVISKEKQKLQEEVMKLKARLRKQAFRTQTFGCYTEISGEETVESSSEALRDSNKPRGTSNIQQAGEGYCSFTVEDYNRVSMPNCHWPVVSYYP* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03418 222 Pfam Homeodomain 58 113 IPR001356 GO:0003677
Rops8g03418 222 SUPERFAMILY Homeodomain-like 48 117 IPR009057 -
Rops8g03418 222 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677
Rops8g03418 222 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677
Rops8g03418 222 FunFam Putative homeobox-leucine zipper protein ATHB-51 57 120 - -
Rops8g03418 222 Pfam Homeobox associated leucine zipper 115 149 IPR003106 GO:0006355|GO:0043565
Rops8g03418 222 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Rops8g03418 222 CDD homeodomain 58 116 IPR001356 GO:0003677
Rops8g03418 222 SMART HOX_1 57 119 IPR001356 GO:0003677
Rops8g03418 222 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Rops8g03418 222 Coils Coil 114 155 - -
Rops8g03418 222 Gene3D - 50 123 - -
Rops8g03418 222 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 180 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03418 Rops-Chr8 73242047 73243819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03418 16 145 Homeobox Transcription Factor Family AT5G03790 55.797 8.75e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops8g03418 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03418 - - gmx:100807872 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03418 8 73242047 73243819 Rops8g03418 8 73242047 73243819 ECH
Rops6g00932 6 22749572 22750536 Rops8g03418 8 73242047 73243819 PCT