Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03416 ATGGTGCTCAAGACTGAACTTTGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAGAGGCATCAGATTTGTTCGTGGTGATTCTCAGGTCTTCCTGTTTGCAAACTCAAAATGCAAAAGGTATTTCCACAACCGATTGAAGCCATCAAAGCTCACATGGACTGCCATGTATAGGAAGCAACACAAGAAGGACATTGCCCAAGAAGCTGTGAAGAAGAGGCGTCGTGCTACCAAAAAGCCTTACTCTAGGTCCATCGTTGGTGCTACTTTGGAAGTTATCCAGAAAAAGAGAGCTGAGAAGCCAGAGGTTCGAGATGCAGCTAGGGAAGCTGCTCTTCGTGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAGAAGAAGGCTAAGAAAGCTGAAGTAACGGCAAAGACCCAAAAAGCTCAAGGCAAAGGCAATGTTCCCAAGGGTTCTGGACCCAAAGGTCCCAAATTGGGTGGTGGAGGCGGGAAACGCTGA 495 0.4707 MVLKTELCRFSGAKIYPGRGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVTAKTQKAQGKGNVPKGSGPKGPKLGGGGGKR* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03416 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Rops8g03416 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Rops8g03416 164 Coils Coil 112 139 - -
Rops8g03416 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Rops8g03416 164 MobiDBLite consensus disorder prediction 117 136 - -
Rops8g03416 164 SMART 4TRASH 8 46 IPR011017 -
Rops8g03416 164 MobiDBLite consensus disorder prediction 117 164 - -
Rops8g03416 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Rops8g03416 164 Gene3D - 69 141 - -
Rops8g03416 164 PANTHER 60S RIBOSOMAL PROTEIN L24 4 150 IPR000988 -
Rops8g03416 164 FunFam 60S ribosomal protein L24 3 64 - -
Rops8g03416 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03416 Rops-Chr8 73228747 73230834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03416 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 85.987 8.43e-90 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03416 K02896 - rvl:131300223 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03416 8 73228747 73230834 Rops8g03416 8 73228747 73230834 ECH
Rops8g03416 8 73228747 73230834 Rops6g00933 6 22760132 22761974 PCT