Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03407 ATGATTGCTGAAACAAACATGAGACCAAGCTTCCATTTTAGCTATGCCCTTCTTCTTTTCCTGTTCCTTTTCCTTTGTCATTATACTTGTTCCCAAAAGACATGCCCAAACTGTGGCTCTATGGAAGTTCCATATCCTTTGAGCACAGAACCAACTTGTGGTGATCCATATTATAGGCTTCGTTGTGATCCACACTCTCAGAAACTTTACTTTGACACCCTCAATGGAAGTTCTTATGTAGTACTCAAAATCATGTCTTCAATCCAACGCATGGTGGTAGAGCCATCACCTTGGATACCCGGTTCATGTGTTACACAAGACATGCCGGTAAGCAATGGTATTTGGTTAAATCAATCACTTCCTTTTAACATAACTCCATCCAACACACTGTTTCTCTTCAACTGTTCCCCTCGCCTTTTGGTTTCTCCTCTTAACTGCACTTCTTCTAGTATTTGTCATCGTTACTTGGAGAGTTCAGGTCATGTTGATAGAAAAAGAGCACTTGAGTGTGCAAATGGTCTTCACCCTTGTTGCACCTTTGTTGCTGGTGGGGCACCTTCAGCTTACAAGATTAGGCTTCACATTTCTGGTTGCAAAGCATTCAGAAGCATCCTTCATTTGGATCAAGATAAACCTCCTAATCAGTGGGAGGAAGGTCTTGAAATTCAATGGTCTCCTCCACCTGAACCTGCCTGCAAGACACAAAGGGATTGTTCTGGAGACTCTAAGTGTTCCCCTACTGGTAAAAATACCCTCTTTCGCTGTCTTTGTAATAGGGGACACCATTGGGACCCTTATATAGCATCCTGTGTGAGGTATAAGAGAAAATCCAAATGGAAAACCAGCTTGGAGGTCTCGATAGGGGTTATTACTTTTTTCTCTCTAGCTATAGTTCTTGTCATCATCACAAAGTCTTGCAAACTCTCTAGCAAAAGGGAGAAGCAAGACAAGGAAAGAGAAGATGTGCTGAAATCAAGCACTGGGGAGAAACCTTACAGGATGTTTAGACTGAAAGAGTTGAAGAAAGCAACAAATGATTTTTCTAAAGACAGGATCTTAGGGAGTGGTGGCTTTGGTGAAGTTTACAGAGGTGAGCTACAAGATGGAATACCAGTGGCTGTCAAGAAAGCTAAAGTGGGTAACCTGAAAATCACACAACAAGTGCTTAATGAGGTTGCAATACTTTCTCAAGTCAATCACAGGAACCTAGTCAGACTCTTGGGTTGCTGTGTGGAATCTGAGCAGCCTTTGATGATCTATGAGTATATCTCAAATGGGACCCTCTATGACCATCTTCATGGTAGGTATTCCAACTTTCTAGATTGGAAAACAAGGCTGAAGGTTGCTTTTCAAACTGCTGAAGCATTGGCTTACTTGCATTCTGCTGCTCATACTCCTATCTACCATAGAGATGTTAAGTCAACAAATATACTATTGGATGATGAATTTAATGCCAAAGTCTCAGATTTTGGGCTCTCCAGATTGGCTAACCCGGGACTTAGTCATGTGTCAACATGTGCTCAGGGAACACTGGGGTACTTGGATCCTGAATACTATCGTAACTACCAATTAACAGATAAAAGTGATGTTTATAGTTATGGGGTTGTGTTGCTAGAGCTTTTGACTTCTCAGAAAGCAATAGATTTCTCTCGTGATCAAGATGATGTCAACTTAGCAATTCATGTGAGTCAACATGCCAGCAATGGTGCAATCATGGAAGTGGTGGATAAGAGGCTCCTTTCTGTGGAACCTTCAGATGATAAAATGATCACAAACATTAAACTCTTCTCGGAGCTTGCACTTGATTGTCTGAGGGAGAAGAAAGGTGAAAGGCCTAGTATGAGGGATGTTGTTGAACGCCTCCTATGTATAATTAGGATTGTAGATCAAGAGTGA 1896 0.4156 MIAETNMRPSFHFSYALLLFLFLFLCHYTCSQKTCPNCGSMEVPYPLSTEPTCGDPYYRLRCDPHSQKLYFDTLNGSSYVVLKIMSSIQRMVVEPSPWIPGSCVTQDMPVSNGIWLNQSLPFNITPSNTLFLFNCSPRLLVSPLNCTSSSICHRYLESSGHVDRKRALECANGLHPCCTFVAGGAPSAYKIRLHISGCKAFRSILHLDQDKPPNQWEEGLEIQWSPPPEPACKTQRDCSGDSKCSPTGKNTLFRCLCNRGHHWDPYIASCVRYKRKSKWKTSLEVSIGVITFFSLAIVLVIITKSCKLSSKREKQDKEREDVLKSSTGEKPYRMFRLKELKKATNDFSKDRILGSGGFGEVYRGELQDGIPVAVKKAKVGNLKITQQVLNEVAILSQVNHRNLVRLLGCCVESEQPLMIYEYISNGTLYDHLHGRYSNFLDWKTRLKVAFQTAEALAYLHSAAHTPIYHRDVKSTNILLDDEFNAKVSDFGLSRLANPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFSRDQDDVNLAIHVSQHASNGAIMEVVDKRLLSVEPSDDKMITNIKLFSELALDCLREKKGERPSMRDVVERLLCIIRIVDQE* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03407 631 SMART serkin_6 347 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03407 631 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 624 IPR044652 GO:0004672
Rops8g03407 631 ProSiteProfiles Protein kinase domain profile. 347 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03407 631 SUPERFAMILY Protein kinase-like (PK-like) 323 621 IPR011009 -
Rops8g03407 631 Gene3D Phosphorylase Kinase; domain 1 306 422 - -
Rops8g03407 631 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 321 422 - -
Rops8g03407 631 CDD STKc_IRAK 353 621 - -
Rops8g03407 631 Pfam Protein tyrosine and serine/threonine kinase 349 621 IPR001245 GO:0004672|GO:0006468
Rops8g03407 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Rops8g03407 631 ProSitePatterns Protein kinases ATP-binding region signature. 353 376 IPR017441 GO:0005524
Rops8g03407 631 Pfam Wall-associated receptor kinase galacturonan-binding 35 92 IPR025287 GO:0030247
Rops8g03407 631 FunFam Wall-associated receptor kinase-like 20 423 631 - -
Rops8g03407 631 Gene3D Transferase(Phosphotransferase) domain 1 423 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03407 Rops-Chr8 73156357 73157253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03407 35 631 Receptor kinase-like Gene Family AT5G02070 47.302 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops8g03407 PK_Tyr_Ser-Thr 9.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03407 - - gmx:100804678 1095.49