Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03406 ATGGCGATTTCTCCGTCCGTCGGCGCTGCTCCGGCGTCTCTTTACGTCGGTGACCTCCTCCCTGATGTCTCCGACGGCCAGCTTCATGATGCGTTCTCGGAATTCAAGAGTCTCGCTTCTGTTCGTGTTTGCAGAGACTCCTCCACAGGAAGGTCACTCTGTTATGGATATGTCAACTTCCTTTCTCCACAAGACGCAATGCGGGCGATCGAGGTGAAGAATCATTCGACGCTGAATGGAAAAGTGATAAGGGTCATGTGGTCTCGTCGTGATCCTGATGTAAGGAATAGTAACATAGGGAACGTGTTTGTTAAGAACTTAGCTGAATCAATAGATAATGCTGGACTTCAAGATATATTTAAAAAATATGGGAATATTTTGTCCAGCAAAGTTGTCATGTCTGATGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAATCAGAGGAATCTGCAAACACTGCCATTGAGAAGCTGAATGGCTCTACTATCAAGGATAAGCAGATATATGTTGGGAAGTTTATCAAAAAAAGTGATCGCATTTTGCCTGGCCCTGATGCCAGATATACAAATCTGTACATGAAGAATTTGGACCCAGAAATTACAGAAGCACTTCTGCTGGAAAAGTTTTCTGCTTTTGGGAAAATTGTTAGCCTGGCTATTGCAAAGGATGACATCGGGAAGTCAAAGGGTTTTGGCTTCGTGAACTATGATAACACAGATGATGCTAAAAGGGCAATGGAAGCAATGAATGGATCACAACTTGGTTCAAAGATTCTGTATGTAGCCAGGGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTGCACAATCAATTTGAGGAGAAACGAAAGGAACAAATCTTGAAATATAAGGGATCAAACATTTATGTGAAGAACATTGGCGACAATGTTAGCGATGAAGAACTGCGAAATCATTTTAGTGCATGTGGCACTATAACTTCTGCAAAAGTTATGCGAGATGACAAAGGGATAAGTAAAGGGTTTGGTTTTGTCTGCTTCTCCACTCCCGAGGAGGCCAATAAAGCTGTAAACAATTTTCATGGATTCATGTTTCATGGTAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAGGACAGGCAAGCACAGTTGCAGCTCCATTATGCACAGCAAATAGCAGGACTAGCTGGTTCTTCAACTGCCATTATTCCTGGTGGATTTCCTCCTTACTACTATGCAGCTACTGGTGTTGTTTCACATGTGCCTCCTCGATCTGGGCTCATGTATCAGCCTCTGGCATTGAGGCCAGGATGGAGGGCTAATGGCTTTGCAGCTCCTGCTAGATCATTTCAACAATCACCAACCGTTCCTGTTGTCTCTAACAATACTAGGCCGCATAGGCAAAACAGGGGCAGGATGAATGGGCATGCAATATCACAGGGAAATACTCACTCTGGTACTTACATGCCACAAGCCCAGCAGGCTTCTCAGTCAGTGGTCTCTTCAAGAGACTCAAGTACTCAGCAGAGAACTGGACAGGCTAAATATGTGCCTAGTGGACGCCAACGTGAGATGGAAAAAGGATCTGGATTCTCATCCAGTGGTTCAAACTCTGGTCGAGGGTCCCAGGGATCAGAAGTGCTGCATAGCATGCTTGCTGCTGCTACTCCTGAGCAGCAGAAAGAGATACTTGGCGAGCATCTATACATGCTTGTCCAGAAACTCAAGCCTAGCCTGGCATCAAAGATTACGGGGATGCTTTTGGAGATGGACAATGCAGAATTGCTGTTGCTCCTGGAATCACCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTGTCCAAATGCTTAAGAACTCCAAGACCAAAGTTTCTGGCCAGGATGTAATACACTCAAATTACCTTTCAGCTGAGAACCCCTACAATTCCCTTCATCTTCTCCGTCACACCGCCACAGAGAAAATGGGTGGGAGCAGTAGTAGAAAAGGGCGAAGACGAAGAAGATCAGAAGATTCTGCATCAGAGTCAGAGTCCTATGAATCAGACTCCGACAACCGCCGGAGAAGTATTCGGCGGTCACGGCGGGACTCAGATGATGATTCCAGTGATGACGATAGGGGTGGAAGGAAGAAGAAGTCCTCTAGGGCAATCACAGAAGAGGAAATAGCACAGTACATGGCCAAAAAGGCACAGAGAAAGGCAACGAAAGTAGCTAAAAAGTTAAAGACCAATACGGTATCGGGTTATTCCAATGATTCAAATCCCTTTGGTGACTCTAATCTCAATGAGAAGTTTGTTTGGCGCAAGAAGATTGAGCGTGATGTTACTCAAGGTGTATCTATTGATTCATTTTCAGTTAAAGCTGAGAAAAAGAGACAGAAAGAAAGGATGGCAGAAATTGAAAAAGTAAAAAAGAGAAGAGAGGAAAGGGCACTTGAGAAAGCACAACACGAGGAAGAAATGGCATTGTTGGCCAGAGAACGTGCTCGAGCTGAGTTCCAGGACTGGGAAAAAAAGGAAGAGGAGTTTCATTTTGATCAAAGCAAAGTTAGATCAGAGATTAGATTGCGTGAAGGGCGTGCTAGGCCAATCGATATCCTAACCAAGCACCTCAATGGCTCTGATGATTTGGATATAGAATTAAATGAACCATACATGGTCTTCAAGGGTTTGACTGTGAAAGAAATGAATGAGCTTCGTGATGACATCAAAATGCATCTGGATCTTGACAGGGCAACACCAACCCATGTTGAATATTGGGAGGCTCTCCTTGTGGTGTGTGATTGGGAGCTAGCTGAAGCTCGAAAAAAGGATGCACTTGATCGAGCTAGGGTGCGTGGAGAAGAACCTCCTGCTGAGCTGCTTGCAGAAGAAAGGGGTCTGCATTCTAGTGTTGAGCCAGATGTGAAGAGGCTTTTGCAGGGGAAGACACGTGCAGAGTTGGAGGCTTTACAGGTTCACATTGAATCAGAGATGCGTACAGGTACAGCAAAGGTTGTCGAGTATTGGGAGGCCATTTTAAAACACCTACACATATATAAGGCCAAGGCTTGTTTGAAGGAAATTCATGCTAAAATGTTGCGTAAGCATTTGCAACGCCTTGAACAACCATTGGAGGATGATGATGAATTGGAGAATGCTCATGTTATGGTACCTGAGGAGGGAGATATTGAGGATGACGTTAAAGTCCGATCTGCAGATGAATCATTTTCACCGGAGCCCATTAGAGAGAATCAGGAAGCTGCGGATGAGGCTGGATCATTTTCACCTGAACTGTTGCATGGTGATGAAAATGAGGAAGCTATTGACCCTGAAGAAGATAGGGCTATACTGGAGCGGAAACGTATGGCTGTATTAGAAGAGCAGCAAAGACGAATTCAGGAAGCAATGGCATCAAAGCCAGCACCATCTGAAGATAATTTTGAGATGAAGGCCATAAAAGCTATGGGAGCTATGGAAGATGGAGATGCAGTGTTTGGATCTGGAGCTGAAGTGAACCTAGATTCGCAGGTTTATTGGTGGCATGACAAATACAGGCCTAGGAAGCCGAAGTACTTCAACCGTGTTCACACTGGATATGAGTGGAACAAATATAATCAGACTCACTATGATCATGACAACCCACCTCCGAAGATTGTGCAAGGGTACAAGTTTAACATTTTCTATCCTGATCTTGTGGACAAGATAAAAGCCCCAACCTACACCATTGAGAAGGATGGCAGCAATGGGGAGACTTGCATTATAAGATTCCATGCAGGGCCACCGTATGAAGACATAGCTTTCCGCATTGTAAACAAAGAATGGGAATATTCTCATAAGAAAGGTTTTAAGTGCACATTTGAACGTGGAATTCTACATGTGTACTTCAATTTCAAACGCCACCGCTACCGCAGATAA 3879 0.4447 MAISPSVGAAPASLYVGDLLPDVSDGQLHDAFSEFKSLASVRVCRDSSTGRSLCYGYVNFLSPQDAMRAIEVKNHSTLNGKVIRVMWSRRDPDVRNSNIGNVFVKNLAESIDNAGLQDIFKKYGNILSSKVVMSDDGKSKGYGFVQFESEESANTAIEKLNGSTIKDKQIYVGKFIKKSDRILPGPDARYTNLYMKNLDPEITEALLLEKFSAFGKIVSLAIAKDDIGKSKGFGFVNYDNTDDAKRAMEAMNGSQLGSKILYVARAQKKAEREQILHNQFEEKRKEQILKYKGSNIYVKNIGDNVSDEELRNHFSACGTITSAKVMRDDKGISKGFGFVCFSTPEEANKAVNNFHGFMFHGKPLYVALAQRKEDRQAQLQLHYAQQIAGLAGSSTAIIPGGFPPYYYAATGVVSHVPPRSGLMYQPLALRPGWRANGFAAPARSFQQSPTVPVVSNNTRPHRQNRGRMNGHAISQGNTHSGTYMPQAQQASQSVVSSRDSSTQQRTGQAKYVPSGRQREMEKGSGFSSSGSNSGRGSQGSEVLHSMLAAATPEQQKEILGEHLYMLVQKLKPSLASKITGMLLEMDNAELLLLLESPESLSAKVEEAVQMLKNSKTKVSGQDVIHSNYLSAENPYNSLHLLRHTATEKMGGSSSRKGRRRRRSEDSASESESYESDSDNRRRSIRRSRRDSDDDSSDDDRGGRKKKSSRAITEEEIAQYMAKKAQRKATKVAKKLKTNTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVTQGVSIDSFSVKAEKKRQKERMAEIEKVKKRREERALEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDILTKHLNGSDDLDIELNEPYMVFKGLTVKEMNELRDDIKMHLDLDRATPTHVEYWEALLVVCDWELAEARKKDALDRARVRGEEPPAELLAEERGLHSSVEPDVKRLLQGKTRAELEALQVHIESEMRTGTAKVVEYWEAILKHLHIYKAKACLKEIHAKMLRKHLQRLEQPLEDDDELENAHVMVPEEGDIEDDVKVRSADESFSPEPIRENQEAADEAGSFSPELLHGDENEEAIDPEEDRAILERKRMAVLEEQQRRIQEAMASKPAPSEDNFEMKAIKAMGAMEDGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR* 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03406 1292 FunFam Polyadenylate-binding protein 101 181 - -
Rops8g03406 1292 CDD RRM2_I_PABPs 99 174 IPR045305 -
Rops8g03406 1292 Gene3D - 101 180 IPR012677 -
Rops8g03406 1292 Coils Coil 263 283 - -
Rops8g03406 1292 Pfam Cactus-binding C-terminus of cactin protein 1168 1292 IPR019134 GO:0005515
Rops8g03406 1292 CDD RRM4_I_PABPs 293 371 - -
Rops8g03406 1292 MobiDBLite consensus disorder prediction 1058 1095 - -
Rops8g03406 1292 SUPERFAMILY RNA-binding domain, RBD 11 93 IPR035979 GO:0003676
Rops8g03406 1292 FunFam Polyadenylate-binding protein 182 276 - -
Rops8g03406 1292 FunFam Polyadenylate-binding protein 4 99 - -
Rops8g03406 1292 SMART poly_2 551 614 IPR002004 GO:0003723
Rops8g03406 1292 MobiDBLite consensus disorder prediction 444 540 - -
Rops8g03406 1292 MobiDBLite consensus disorder prediction 521 540 - -
Rops8g03406 1292 SMART rrm1_1 13 86 IPR000504 GO:0003723
Rops8g03406 1292 SMART rrm1_1 192 264 IPR000504 GO:0003723
Rops8g03406 1292 SMART rrm1_1 295 367 IPR000504 GO:0003723
Rops8g03406 1292 SMART rrm1_1 101 173 IPR000504 GO:0003723
Rops8g03406 1292 MobiDBLite consensus disorder prediction 444 511 - -
Rops8g03406 1292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Rops8g03406 1292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Rops8g03406 1292 SUPERFAMILY RNA-binding domain, RBD 101 272 IPR035979 GO:0003676
Rops8g03406 1292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Rops8g03406 1292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Rops8g03406 1292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Rops8g03406 1292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Rops8g03406 1292 Pfam Poly-adenylate binding protein, unique domain 546 611 IPR002004 GO:0003723
Rops8g03406 1292 Coils Coil 784 828 - -
Rops8g03406 1292 SUPERFAMILY PABC (PABP) domain 543 622 IPR036053 GO:0003723
Rops8g03406 1292 SUPERFAMILY RNA-binding domain, RBD 292 382 IPR035979 GO:0003676
Rops8g03406 1292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Rops8g03406 1292 Gene3D - 181 274 IPR012677 -
Rops8g03406 1292 Pfam Conserved mid region of cactin 820 1017 IPR018816 -
Rops8g03406 1292 Gene3D - 275 382 IPR012677 -
Rops8g03406 1292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Rops8g03406 1292 Gene3D - 5 100 IPR012677 -
Rops8g03406 1292 SMART CactinC_cactus_3 1168 1292 - -
Rops8g03406 1292 FunFam Polyadenylate-binding protein 277 385 - -
Rops8g03406 1292 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 690 1292 - -
Rops8g03406 1292 SMART rrm2_1 187 264 IPR003954 GO:0003676
Rops8g03406 1292 SMART rrm2_1 101 173 IPR003954 GO:0003676
Rops8g03406 1292 SMART rrm2_1 295 367 IPR003954 GO:0003676
Rops8g03406 1292 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 539 616 IPR002004 GO:0003723
Rops8g03406 1292 MobiDBLite consensus disorder prediction 645 713 - -
Rops8g03406 1292 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 612 IPR006515 GO:0003723
Rops8g03406 1292 Gene3D - 537 629 - -
Rops8g03406 1292 FunFam Polyadenylate-binding protein 537 623 - -
Rops8g03406 1292 MobiDBLite consensus disorder prediction 658 712 - -
Rops8g03406 1292 MobiDBLite consensus disorder prediction 1058 1074 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03406 Rops-Chr8 73126120 73147848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03406 12 631 Eukaryotic Initiation Factors Gene Family AT2G36660 53.291 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03406 K25058 - gmx:100780087 1100.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03406 8 73126120 73147848 Rops8g03406 8 73126120 73147848 ECH