Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03398 ATGGACAACAAGGAAGCCAAATCTGTATTGGGCTCCTATGCCACCCCTCTTGTTATCTCTGCTGTTGGCATAATCTGCTCCACTCTAGCAATAGCAGCGTACCATTTCTTTCTATCAAGGTATTTCTTTAGGCCTCAGAGAGTGCAACGCAGGAACAACAGACGCCGCATAAAAAATGGTGGGGTCCAAGAGGAAATCCTCAACAAGATCCCAGTTCTCCAATACTCAATCCAAAACAATGAGGCCTTTCGTTTGGACCATAATGAATGTTTCATTTGCCTTGGAGAATTGGAAGATGGGGAGTTAGTTCGATTGTTGCCTGCTTGTAACCATGCCTTCCATGTTCCTTGCATTGATGCATGGTTCTTGAACCATGCAAATTGCCCCGTTTGCAGGTCACAAATTACATGTGATTGTGAATCAGCTATGGCAACAGCTTTAGAAAATGGTTCACAAAGATTGTCACATGTGCCTGGAATTCACAGTGAGCATCATCAGTTAATGAATGATAATGTTAGTGTTTCCAGTTCCACTTTAAGGGTTCCAAGACCTCACCCTGTATTGCTTCAACACTCTCTCTCTTTCTCATCACACATGCAGAAAAAGCCACGAGCTGTAGACATGTGGTTGAAGAGGTCCTTGTCTTTGAATCAATCATCTTTATATATTGCTATTCCCATACAACGAGATCAGGAAAAGGCTTCCACTTCTTCTTCTTCTACCAAAGGGGTTGTGATGAGTCGGTATTACTATAAATTGAGATCATTTAGGCATCTTGATCGCATGCCTTCGGTGTTGATGAGATCCTTCTCGCGATTACGGAATAGTGAAAGTGGGAGATACAATGGGATTCTTCCAAGTTGA 864 0.4259 MDNKEAKSVLGSYATPLVISAVGIICSTLAIAAYHFFLSRYFFRPQRVQRRNNRRRIKNGGVQEEILNKIPVLQYSIQNNEAFRLDHNECFICLGELEDGELVRLLPACNHAFHVPCIDAWFLNHANCPVCRSQITCDCESAMATALENGSQRLSHVPGIHSEHHQLMNDNVSVSSSTLRVPRPHPVLLQHSLSFSSHMQKKPRAVDMWLKRSLSLNQSSLYIAIPIQRDQEKASTSSSSTKGVVMSRYYYKLRSFRHLDRMPSVLMRSFSRLRNSESGRYNGILPS* 288
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03398 287 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Rops8g03398 287 Pfam Ring finger domain 88 132 IPR001841 -
Rops8g03398 287 SMART ring_2 90 131 IPR001841 -
Rops8g03398 287 CDD RING-H2_EL5-like 89 132 - -
Rops8g03398 287 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 138 IPR044675 -
Rops8g03398 287 SUPERFAMILY RING/U-box 89 138 - -
Rops8g03398 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 138 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops8g03398 Rops-Chr8 73043514 73044377 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03398 19 136 C3H Transcription Factor Family AT5G17600 34.586 4.44e-23 95.5