Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03393 ATGACACCTTCCCCCACCTCTAGCACTGCCATTAGTCCTCAAGATAGTTCTATTTTTCAGCTGGGTATCTTTGGTGAGATTATAAAGCTTAGTGGTGCTCAAGACTTTGTGTCTTTGCTAACAAGTATTGCAAGGAGGAGACATCATAGGCATAAGGACAAGTGTGACAAGTCCAAATGGGATTCCAAGCTAATTTCAGACCATAATGTGAGTCTCGTTTTTACTGTTGACTTAAAGGGTTGTGCTAACTTCAGTAGCGTGCAGAAAGCAGTTAATGCTGTTCCTGAGTCTAGCTCTGATACCACCCTTATCATAATCGACTCTGGTACATACAGGGAGAAGGTAGTGGTGCAGGCCAACAAAACAAACTTGATACTTCAAGGTAAAGGGTATCTTAAAACAATCATAGAATGGAATGACACCTCAAATTCCACTGGAGGGACTTCTAATAGCTACTCGTTTGCCGTCTTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAAGAACACGGCTCCTCAGCCATCACCAGGGGAGGTTGGGGCACAAGCAGTGGCACTGAGAGTTACAGGTGATCAAGCTGCTTTCTATGGATGTGGGTTTTATGGTGCACAGGACACACTAAATGATGACAGTGGAAGGCATTATTTTAAAGAATGTTTCATCCAAGGATCCATTGATTTCATATTTGGAAATGCCAGATCACTTTATGAGGATTGTACCATCAACTCTATAGTAAAACAAGAGTTGGAAGGGGTTGGCGGGTGTATCACAGCTCAAGGGCGTCAATCGATGAAAGAGGAAACTGGGTTTTCGTTTGTGAATTGTAGCATTGTTGGGAGTGGGAAAGTGTGGCTTGGAAGAGCTTGGGGATCCTATGCCACTGTGGTCTTCTCAACAACATACATGTCTGATGTTGTAGCTGCTGAAGGATGGAACGATTGGGGAGATCCCTCTAGAGATCAGAGCGTTTTCTTTGGGGAGTACCGTTGTCTGGGACCAGGAGCAAACTATACATCTCGAGTCTCTTATGCGAAGCAACTCAGGGATTATGAAGCAAACTCCTACATGAACATTTCGTTCATAAATGGAGAAGATTGGCTTCTTTAA 1110 0.4342 MTPSPTSSTAISPQDSSIFQLGIFGEIIKLSGAQDFVSLLTSIARRRHHRHKDKCDKSKWDSKLISDHNVSLVFTVDLKGCANFSSVQKAVNAVPESSSDTTLIIIDSGTYREKVVVQANKTNLILQGKGYLKTIIEWNDTSNSTGGTSNSYSFAVFASKFTAYNISFKNTAPQPSPGEVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDSGRHYFKECFIQGSIDFIFGNARSLYEDCTINSIVKQELEGVGGCITAQGRQSMKEETGFSFVNCSIVGSGKVWLGRAWGSYATVVFSTTYMSDVVAAEGWNDWGDPSRDQSVFFGEYRCLGPGANYTSRVSYAKQLRDYEANSYMNISFINGEDWLL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03393 369 ProSitePatterns Pectinesterase signature 2. 222 231 IPR033131 -
Rops8g03393 369 SUPERFAMILY Pectin lyase-like 71 368 IPR011050 -
Rops8g03393 369 FunFam Pectinesterase 68 369 - -
Rops8g03393 369 Gene3D - 68 369 IPR012334 -
Rops8g03393 369 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 64 368 - -
Rops8g03393 369 Pfam Pectinesterase 76 364 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03393 Rops-Chr8 72980945 72986718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03393 67 368 Carbohydrate Esterase AT1G05310 54.754 2.48e-119 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03393 - - gmx:100802034 622.854