Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03392 ATGGATGCCGCGGAATTGGAATCCGAAAATCAGCCTCGCAAGACACGGAAAGTTTCCGTGGTGAATGGTTACATTGTTTACACTCGCGCCAAGAGGTCCCTCGACTCGTGTAACGGTTTTTCAGAGGAAGGTGAATTCAAGAGATTATCCAGGGAAAATGCAGAGGTTCCGATTAAATTGGAGAATGGAGCAGTGGATTGCTGTATGGGAAGGGATGGTGAGTGTGATGAGCTCAAGAGCGAGTCGAAAGAGGTTGCCATGAGGACGTTCAAGCGGTATAGGCGATCGAGGTTGAAAGCAAAGGTTGAATCCACGGTGACTGAAGGTGCTCCAGTTACCATCAACGGTGGTGGTGAATTAGCAGCTCCAAGAAACAAGTTGGAGTTGAAGATGTCGAAGAAGATTGTGGTCAATAGGAAGAAGCCTATGACTGTTAAGGAGCTCTTTGATACTGGTTTTCTTGATGGTGTTTCTGTAGTCTACATGGGAGGCATTAAGAAGGCTTCAGGATTACGGGGTGTTATTAGAGATGGGGGAATATTGTGCTCATGCTGTCTGTGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAGATCCATGCTATCAAACAATATAGGAGAGCAACACAGTATATTTGTCTCGAAAATGGGAAGAGCCTGCTTGATCTATTGAAAGCATGCAGGGGAGCTTCCCTGCATACTTTGGAGGCGACAGTTCACAATTTTGTTTGTTCCCCACCTGAAGAAAAATATTTTACTTGTAAAAGGTGCAAAGGATGTTTCCCTTCTTCCTGTGTGGAAAGAGTGGGGCCTATATGCTGTTCTTGTGTGGAATCAAGGAAATCTGAAGAAAATGTGAATAATGTAGTTGGCAAAAGAGTCAGGTCTCCCAGACCAGCATCTGTCTCCAATCCACCCAGTACTTCTGAGCTGTCTATCTCTTCACAAATTAAGAGATTCTGGAACAAAAGAACAAAGTCATCAAAAAGGGTTAGCAGCTCAAATTCTTCCAAGAGTGCTTCTGTGCCTATTCTACCCAAGAAGAAAATCTTGTTGAAGATTAAAAAGAAGTGGTCACTGTCGGTAAAGTCAAAGACCCCAAAAATCACTTCAAATTCTAAGTGTTTATCTCCACAAAATAAGAGTCAATGGAGAATAACTAAGAAGGATCAGCGATTGCATAAGTTAGTTTTTGGGGCAGATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCACGTGGTCAGAAATTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTGTTTGCCAATGCTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACGTCGAATGGGGTGTCTCTCCATGAGTTAGCAATCTCTCTCTCAAAAGATCGAAAATACTCTGCAAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTCTATCTAGTATTCCGCGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGGGAAAAGTTTGTGGCGTACAATGCCAATGCTGTGGCTGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAACAGATAAACAATAGATGCATTCGCATAGTCAAAGATGTTGAAGCTGAACTTAGTGGGTGTGCTTTATGCAGGGGTGTTGACTTCAGCACATCTGGCTTTGGTCCACGCACAATAATAATCTGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATTACAAGATGGCATATTTAAAGGAATTGCCGGAAGGCAATTGGCTTTGTTGCAATGATTGCACAAGAGTACATTATACTTTGGAGAACCTTTTGGTTAGGGGGGCTGAGAGACTCCCTGAATCTCTCTTGGGAGTAATAAAGAAAAAGCACGAAGAAAAAGGATTAGATCCCATTAACGATATTAACGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCAGAAACTAGATCATTGCTTTTGGAGGCTGTTTCAATCTTCCATGAATGCTTCAATCCTATTGTTGATGCAACTAGTGGACATGACCTTATTCCAGCCATGGTTTATGGAAGGAATGTGCGGGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTAGTATCTGCGGGCATGCTTCGAATTTTTGGCACAGATATTGCAGAACTTCCTTTAGTTGCAACAAGTAACAGGAACCATGGAAAGGGTTACTTCCAAACACTCTTTTCCTGCATTGAGAGGCTCCTGGCTTTCTTGAATGTGAAGAACCTTGTGCTGCCAGCTGCAGAAGAAGCAGAGTCCATATGGACAGATAAATTTGGGTTTAGCAAGATGAAACCAGACCAGCTTACCAACTATAGAAAGAACTGCAATCAGATGGTGACATTCAAAGGCACAAATATGCTTCATAAAATGGTGCCTCCATGTCGAGTCATCAATAATCAATCATGA 2565 0.4277 MDAAELESENQPRKTRKVSVVNGYIVYTRAKRSLDSCNGFSEEGEFKRLSRENAEVPIKLENGAVDCCMGRDGECDELKSESKEVAMRTFKRYRRSRLKAKVESTVTEGAPVTINGGGELAAPRNKLELKMSKKIVVNRKKPMTVKELFDTGFLDGVSVVYMGGIKKASGLRGVIRDGGILCSCCLCNGRRVIPPSQFEIHAIKQYRRATQYICLENGKSLLDLLKACRGASLHTLEATVHNFVCSPPEEKYFTCKRCKGCFPSSCVERVGPICCSCVESRKSEENVNNVVGKRVRSPRPASVSNPPSTSELSISSQIKRFWNKRTKSSKRVSSSNSSKSASVPILPKKKILLKIKKKWSLSVKSKTPKITSNSKCLSPQNKSQWRITKKDQRLHKLVFGADGLPDGTEVAYYARGQKLLEGFKMGSGIVCQCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAYNANAVAAGRVEGVDPIEQINNRCIRIVKDVEAELSGCALCRGVDFSTSGFGPRTIIICDQCEKEYHVGCLRDYKMAYLKELPEGNWLCCNDCTRVHYTLENLLVRGAERLPESLLGVIKKKHEEKGLDPINDINVRWRLLNGKIASPETRSLLLEAVSIFHECFNPIVDATSGHDLIPAMVYGRNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNRNHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKMKPDQLTNYRKNCNQMVTFKGTNMLHKMVPPCRVINNQS* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03392 854 ProSiteProfiles Zinc finger PHD-type profile. 486 531 IPR019787 -
Rops8g03392 854 PANTHER AUTOIMMUNE REGULATOR 55 843 - -
Rops8g03392 854 Pfam PHD-finger 489 530 IPR019787 -
Rops8g03392 854 Gene3D - 675 844 - -
Rops8g03392 854 Pfam Tify domain binding domain 173 228 IPR032308 -
Rops8g03392 854 Pfam Tify domain binding domain 426 472 IPR032308 -
Rops8g03392 854 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 475 552 - -
Rops8g03392 854 CDD PHD1_AIRE 488 528 - -
Rops8g03392 854 ProSitePatterns Zinc finger PHD-type signature. 489 528 IPR019786 -
Rops8g03392 854 MobiDBLite consensus disorder prediction 291 312 - -
Rops8g03392 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 573 635 IPR013083 -
Rops8g03392 854 SMART PHD_3 576 633 IPR001965 -
Rops8g03392 854 SMART PHD_3 488 529 IPR001965 -
Rops8g03392 854 SUPERFAMILY FYVE/PHD zinc finger 475 534 IPR011011 -
Rops8g03392 854 SUPERFAMILY FYVE/PHD zinc finger 567 632 IPR011011 -
Rops8g03392 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 474 564 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03392 Rops-Chr8 72961214 72978112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03392 88 851 PHD Transcription Factor Family AT2G36720 52.497 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops8g03392 TDBD 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03392 - - gmx:100802562 1394.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03392 8 72961214 72978112 Rops6g00959 6 23019897 23028989 PCT
Rops6g01996 6 37811310 37815909 Rops8g03392 8 72961214 72978112 PCT