Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03374 ATGCAGGACCAAGAGGAACATGTGGTGTGTAAGGATCACATGCAAATCATAAAGGGTAAGCGCACAAAGCGTCAAAGGCTACCTTCCCCACTTAGGCTATCCATGTCAACATCTTCTGGAAGAAGCAGCACTGAAAATTCCACCACCTCAATTGATGAATTCAGGAACAGAACTGAAGAAGAAGAAGAGGACATGGCCAATTGTTTGATTCTCTTGGCTCAAGGAAATCATACCCAGAAAGCCTCACAGTCACAACATGTAGCTGCACCTAACAATAATAATAACAACAAACAAGGGCAAGGGCTTTACCTATACCAGTGCAAGACCTGTAACCGATGTTTCCCTTCATTTCAAGCCCTTGGTGGACATAGAGCTAGCCACAAGAAAGCTAAGGCAAATACTGTTGTTGTTGGTACAGAAGAAAAGCAAGCAATTAATACTACTTTTGTGAATGAAGATGATCATAATTATGATAACCCCACAAACCCCAACTTTACCTTACAATTATCATCATCCAGGGCTTTGTATAGAAGCAGCACCATCACTACAACTAAATCTAAAGTTCATGAGTGTTCCATTTGTGGGGCTGAGTTCACATCTGGGCAAGCCTTGGGGGGACATATGAGGCGGCATAGAACATTTTTGAGTAATTCTACAACATTATCTATGAGTGGGACAAATGTTGAGAGCCCTGAAGCACAAGAATCCAAGAAACCCAAAAATGTTTTGAAGTTGGACTTGAATCTTCCGGCACCTGAGGATGATCACAGAGAATCCAAGTTCCCGTTTCAGTCCAAAGAAAAAGTTATTGTGTTCTCTACAAATTCTTTGGTGGATTGCCATTGTCTTTTTCTATAA 858 0.4126 MQDQEEHVVCKDHMQIIKGKRTKRQRLPSPLRLSMSTSSGRSSTENSTTSIDEFRNRTEEEEEDMANCLILLAQGNHTQKASQSQHVAAPNNNNNNKQGQGLYLYQCKTCNRCFPSFQALGGHRASHKKAKANTVVVGTEEKQAINTTFVNEDDHNYDNPTNPNFTLQLSSSRALYRSSTITTTKSKVHECSICGAEFTSGQALGGHMRRHRTFLSNSTTLSMSGTNVESPEAQESKKPKNVLKLDLNLPAPEDDHRESKFPFQSKEKVIVFSTNSLVDCHCLFL* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03374 285 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Rops8g03374 285 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Rops8g03374 285 MobiDBLite consensus disorder prediction 219 243 - -
Rops8g03374 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Rops8g03374 285 SMART c2h2final6 189 211 IPR013087 -
Rops8g03374 285 SMART c2h2final6 105 127 IPR013087 -
Rops8g03374 285 Pfam C2H2-type zinc finger 188 212 - -
Rops8g03374 285 Pfam C2H2-type zinc finger 105 129 - -
Rops8g03374 285 MobiDBLite consensus disorder prediction 18 59 - -
Rops8g03374 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 211 IPR013087 -
Rops8g03374 285 PANTHER ZINC FINGER PROTEIN ZAT5 35 266 - -
Rops8g03374 285 SUPERFAMILY beta-beta-alpha zinc fingers 104 211 IPR036236 -
Rops8g03374 285 Gene3D Classic Zinc Finger 169 244 - -
Rops8g03374 285 MobiDBLite consensus disorder prediction 29 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03374 Rops-Chr8 72633235 72634092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03374 16 281 C2H2 Transcription Factor Family AT5G03510 43.206 7.60e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g03374 zf-C2H2_6 1.9e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03374 - - ccaj:109798139 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03374 8 72633235 72634092 Rops8g03374 8 72633235 72634092 ECH
Rops6g00978 6 23647096 23648159 Rops8g03374 8 72633235 72634092 ECH
Rops7g00629 7 8167546 8168933 Rops8g03374 8 72633235 72634092 ECH
Rops8g03374 8 72633235 72634092 Rops7g00629 7 8167546 8168933 ECH
Rops8g03374 8 72633235 72634092 Rops6g00978 6 23647096 23648159 PCT